Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L3W entry

There is 1 chain in PDB entry 6L3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ASN 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6L3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
69 84Right-handed alpha
Helix 3
AA3
A
91 98Right-handed alpha
Helix 4
AA4
A
138 142Right-handed 310
Helix 5
AA5
A
152 163Right-handed alpha
Helix 6
AA6
A
212 227Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6L3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
50 54anti-parallel
Strand 4
A
4 12parallel
Strand 5
A
59 66anti-parallel
Strand 6
A
113 118parallel
Strand 7
A
102 107anti-parallel
Strand 8
A
88 89anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
167 173parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
191 194anti-parallel
Strand 5
A
145 149parallel
Strand 6
A
201 209anti-parallel
Strand 7
A
254 259parallel
Strand 8
A
243 248anti-parallel
Strand 9
A
230 237anti-parallel
Strand 10
A
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
167 173parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
191 194anti-parallel
Strand 5
A
145 149parallel
Strand 6
A
201 209anti-parallel
Strand 7
A
292 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il