Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L3Y entry

There are 2 chains in PDB entry 6L3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 80PRO 581
A
 PRO 80PRO 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6L3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
81 97Right-handed alpha
Helix 2
AA2
B
111 120Right-handed alpha
Helix 3
AA3
B
171 175Right-handed 310
Helix 4
AA4
B
178 183Right-handed alpha
Helix 5
AA5
B
231 236Right-handed alpha
Helix 6
AA6
B
236 244Right-handed alpha
Helix 7
AA7
B
244 267Right-handed alpha
Helix 8
AA8
B
307 317Right-handed alpha
Helix 9
AA9
B
353 374Right-handed alpha
Helix 10
AB1
B
403 411Right-handed alpha
Helix 11
AB2
B
421 435Right-handed alpha
Helix 12
AB3
B
444 457Right-handed alpha
Helix 13
AB4
B
472 476Right-handed 310
Helix 14
AB5
B
536 545Right-handed alpha
Helix 15
AB6
B
557 565Right-handed alpha
Helix 16
AB7
B
569 573Right-handed 310
Helix 17
AB8
A
81 97Right-handed alpha
Helix 18
AB9
A
111 120Right-handed alpha
Helix 19
AC1
A
178 183Right-handed alpha
Helix 20
AC2
A
231 236Right-handed alpha
Helix 21
AC3
A
236 244Right-handed alpha
Helix 22
AC4
A
244 267Right-handed alpha
Helix 23
AC5
A
307 317Right-handed alpha
Helix 24
AC6
A
353 374Right-handed alpha
Helix 25
AC7
A
403 411Right-handed alpha
Helix 26
AC8
A
423 435Right-handed alpha
Helix 27
AC9
A
444 457Right-handed alpha
Helix 28
AD1
A
458 461Right-handed 310
Helix 29
AD2
A
514 518Right-handed 310
Helix 30
AD3
A
536 545Right-handed alpha
Helix 31
AD4
A
557 565Right-handed alpha
Helix 32
AD5
A
569 573Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6L3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 142first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
159 166anti-parallel
Strand 4
B
204 215parallel
Strand 5
B
189 198anti-parallel
Strand 6
B
133 142anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
321 329parallel
Strand 3
B
341 350anti-parallel
Strand 4
B
550 556anti-parallel
Strand 5
B
502 506anti-parallel
Strand 6
B
491 496anti-parallel
Strand 7
B
466 469anti-parallel
Strand 8
B
400 402parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
321 329parallel
Strand 3
B
341 350anti-parallel
Strand 4
B
550 556anti-parallel
Strand 5
B
502 506anti-parallel
Strand 6
B
491 496anti-parallel
Strand 7
B
499 500anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
299 303anti-parallel
Strand 3
B
291 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
390 393anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 139first strand
Strand 2
A
149 156anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
204 215parallel
Strand 5
A
189 198anti-parallel
Strand 6
A
133 139anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
299 303anti-parallel
Strand 3
A
291 294anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 329first strand
Strand 2
A
341 350anti-parallel
Strand 3
A
550 556anti-parallel
Strand 4
A
499 506anti-parallel
Strand 5
A
491 496anti-parallel
Strand 6
A
466 469anti-parallel
Strand 7
A
400 402parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
390 393anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il