Analysis of interatomic Contacts of Structural Units in PDB entry:
6L42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L42 entry

There is 1 chain in PDB entry 6L42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 2049
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 6L42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
77 83Right-handed alpha
Helix 3
AA3
A
138 158Right-handed alpha
Helix 4
AA4
A
184 206Right-handed alpha
Helix 5
AA5
A
219 232Right-handed alpha
Helix 6
AA6
A
240 245Right-handed alpha
Helix 7
AA7
A
251 258Right-handed alpha
Helix 8
AA8
A
262 285Right-handed alpha
Helix 9
AA9
A
292 318Right-handed alpha
Helix 10
AB1
A
361 375Right-handed alpha
Helix 11
AB2
A
402 406Right-handed 310
Helix 12
AB3
A
419 427Right-handed alpha
Helix 13
AB4
A
456 465Right-handed alpha
Helix 14
AB5
A
477 482Right-handed alpha
Helix 15
AB6
A
482 492Right-handed alpha
Helix 16
AB7
A
498 503Right-handed alpha
Helix 17
AB8
A
506 511Right-handed alpha
Helix 18
AB9
A
514 531Right-handed alpha
Helix 19
AC1
A
605 611Right-handed alpha
Helix 20
AC2
A
612 615Right-handed 310
Helix 21
AC3
A
616 621Right-handed alpha
Helix 22
AC4
A
621 627Right-handed alpha
Helix 23
AC5
A
638 652Right-handed alpha
Helix 24
AC6
A
656 661Right-handed alpha
Helix 25
AC7
A
663 667Right-handed 310
Helix 26
AC8
A
670 675Right-handed 310
Helix 27
AC9
A
683 690Right-handed 310
Helix 28
AD1
A
697 713Right-handed alpha
Helix 29
AD2
A
742 750Right-handed alpha
Helix 30
AD3
A
763 776Right-handed alpha
Helix 31
AD4
A
802 819Right-handed alpha
Helix 32
AD5
A
825 838Right-handed alpha
Helix 33
AD6
A
855 859Right-handed 310
Helix 34
AD7
A
875 883Right-handed alpha
Helix 35
AD8
A
897 902Right-handed alpha
Helix 36
AD9
A
929 945Right-handed alpha
Helix 37
AE1
A
956 960Right-handed 310
Helix 38
AE2
A
961 969Right-handed alpha
Helix 39
AE3
A
994 1006Right-handed alpha
Helix 40
AE4
A
1010 1019Right-handed alpha
Helix 41
AE5
A
1029 1037Right-handed alpha
Helix 42
AE6
A
1047 1058Right-handed alpha
Helix 43
AE7
A
1086 1107Right-handed alpha
Helix 44
AE8
A
1140 1155Right-handed alpha
Helix 45
AE9
A
1156 1158Right-handed 310
Helix 46
AF1
A
1195 1200Right-handed alpha
Helix 47
AF2
A
1212 1228Right-handed alpha
Helix 48
AF3
A
1236 1252Right-handed alpha
Helix 49
AF4
A
1257 1266Right-handed alpha
Helix 50
AF5
A
1288 1299Right-handed alpha
Helix 51
AF6
A
1306 1311Right-handed alpha
Helix 52
AF7
A
1345 1350Right-handed alpha
Helix 53
AF8
A
1360 1367Right-handed alpha
Helix 54
AF9
A
1369 1373Right-handed 310
Helix 55
AG1
A
1378 1392Right-handed alpha
Helix 56
AG2
A
1403 1418Right-handed alpha
Helix 57
AG3
A
1435 1443Right-handed alpha
Helix 58
AG4
A
1451 1457Right-handed alpha
Helix 59
AG5
A
1514 1522Right-handed alpha
Helix 60
AG6
A
1536 1544Right-handed alpha
Helix 61
AG7
A
1553 1558Right-handed alpha
Helix 62
AG8
A
1563 1572Right-handed alpha
Helix 63
AG9
A
1617 1628Right-handed alpha
Helix 64
AH1
A
1635 1638Right-handed 310
Helix 65
AH2
A
1639 1647Right-handed alpha
Helix 66
AH3
A
1671 1676Right-handed alpha
Helix 67
AH4
A
1688 1694Right-handed alpha
Helix 68
AH5
A
1758 1773Right-handed alpha
Helix 69
AH6
A
1797 1801Right-handed 310
Helix 70
AH7
A
1859 1866Right-handed alpha
Helix 71
AH8
A
1871 1875Right-handed 310
Helix 72
AH9
A
1900 1909Right-handed alpha
Helix 73
AI1
A
1922 1924Right-handed 310
Helix 74
AI2
A
1925 1933Right-handed alpha
Helix 75
AI3
A
1936 1941Right-handed alpha
Helix 76
AI4
A
2012 2019Right-handed alpha
Helix 77
AI5
A
2029 2034Right-handed alpha
Helix 78
AI6
A
2041 2049Right-handed alpha
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There are 14 sheets in PDB entry 6L42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
164 172parallel
Strand 3
A
176 179anti-parallel
Strand 4
A
22 25anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
164 172parallel
Strand 3
A
122 129parallel
Strand 4
A
113 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
575 577anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
552 553anti-parallel
Strand 3
A
568 571anti-parallel
Strand 4
A
593 595anti-parallel
Strand 5
A
588 589anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 566first strand
Strand 2
A
599 602anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 721first strand
Strand 2
A
728 729anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 923first strand
Strand 2
A
906 912anti-parallel
Strand 3
A
1024 1027parallel
Strand 4
A
1071 1074anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 981first strand
Strand 2
A
1130 1134anti-parallel
Strand 3
A
1117 1121anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1179 1180first strand
Strand 2
A
1185 1186anti-parallel
Strand 3
A
1191 1192anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1328 1330first strand
Strand 2
A
1333 1335anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1699 1700first strand
Strand 2
A
1728 1729anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1709 1712first strand
Strand 2
A
1716 1719anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1723 1726first strand
Strand 2
A
1735 1739anti-parallel
Strand 3
A
1746 1751anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1825 1829first strand
Strand 2
A
1832 1840anti-parallel
Strand 3
A
1843 1850anti-parallel
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