Analysis of interatomic Contacts of Structural Units in PDB entry:
6L4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L4P entry

There are 2 chains in PDB entry 6L4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 196
B
 ALA 1643LYS 1780
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6L4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
41 47Right-handed 310
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
136 139Right-handed 310
Helix 8
AA8
A
150 159Right-handed alpha
Helix 9
AA9
A
161 173Right-handed alpha
Helix 10
AB1
A
185 196Right-handed alpha
Helix 11
AB2
B
1644 1657Right-handed alpha
Helix 12
AB3
B
1659 1669Right-handed alpha
Helix 13
AB4
B
1673 1687Right-handed alpha
Helix 14
AB5
B
1708 1717Right-handed alpha
Helix 15
AB6
B
1720 1727Right-handed alpha
Helix 16
AB7
B
1729 1733Right-handed 310
Helix 17
AB8
B
1734 1746Right-handed alpha
Helix 18
AB9
B
1751 1760Right-handed alpha
Helix 19
AC1
B
1763 1780Right-handed alpha
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There are 2 sheets in PDB entry 6L4P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
52 54parallel
Strand 3
A
74 76parallel
Strand 4
A
97 99parallel
Strand 5
A
119 121parallel
Strand 6
A
144 146parallel
Strand 7
A
178 179parallel
Strand 8
A
182 183anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1696 1699first strand
Strand 2
B
1702 1705anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il