Analysis of interatomic Contacts of Structural Units in PDB entry:
6L4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L4R entry

There is 1 chain in PDB entry 6L4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6L4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed alpha
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
122 127Right-handed alpha
Helix 6
AA6
A
134 145Right-handed alpha
Helix 7
AA7
A
160 166Right-handed alpha
Helix 8
AA8
A
176 197Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
232 237Right-handed alpha
Helix 11
AB2
A
238 253Right-handed alpha
Helix 12
AB3
A
255 257Right-handed 310
Helix 13
AB4
A
258 265Right-handed alpha
Helix 14
AB5
A
288 309Right-handed alpha
Helix 15
AB6
A
313 317Right-handed 310
Helix 16
AB7
A
335 346Right-handed alpha
Helix 17
AB8
A
389 398Right-handed alpha
Helix 18
AB9
A
402 404Right-handed 310
Helix 19
AC1
A
405 418Right-handed alpha
Helix 20
AC2
A
421 433Right-handed alpha
Helix 21
AC3
A
435 441Right-handed alpha
Helix 22
AC4
A
445 456Right-handed alpha
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There are 5 sheets in PDB entry 6L4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
150 154parallel
Strand 5
A
171 174anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
399 400anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
158 159anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
325 330anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
350 352anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
384 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il