Analysis of interatomic Contacts of Structural Units in PDB entry:
6L54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L54 entry

There are 2 chains in PDB entry 6L54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36VAL 3661
B
 MET 1VAL 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are139 helices in PDB entry 6L54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 43Right-handed alpha
Helix 2
AA2
A
62 70Right-handed alpha
Helix 3
AA3
A
71 74Right-handed 310
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
104 106Right-handed 310
Helix 7
AA7
A
113 118Right-handed alpha
Helix 8
AA8
A
123 142Right-handed alpha
Helix 9
AA9
A
150 152Right-handed 310
Helix 10
AB1
A
153 163Right-handed alpha
Helix 11
AB2
A
170 175Right-handed alpha
Helix 12
AB3
A
177 182Right-handed alpha
Helix 13
AB4
A
188 199Right-handed alpha
Helix 14
AB5
A
201 205Right-handed 310
Helix 15
AB6
A
210 223Right-handed alpha
Helix 16
AB7
A
229 246Right-handed alpha
Helix 17
AB8
A
250 269Right-handed alpha
Helix 18
AB9
A
278 293Right-handed alpha
Helix 19
AC1
A
300 313Right-handed alpha
Helix 20
AC2
A
321 324Right-handed 310
Helix 21
AC3
A
325 331Right-handed alpha
Helix 22
AC4
A
338 356Right-handed alpha
Helix 23
AC5
A
362 367Right-handed alpha
Helix 24
AC6
A
379 388Right-handed alpha
Helix 25
AC7
A
388 395Right-handed alpha
Helix 26
AC8
A
398 420Right-handed alpha
Helix 27
AC9
A
420 425Right-handed alpha
Helix 28
AD1
A
444 456Right-handed alpha
Helix 29
AD2
A
457 460Right-handed 310
Helix 30
AD3
A
472 480Right-handed alpha
Helix 31
AD4
A
480 485Right-handed alpha
Helix 32
AD5
A
487 492Right-handed alpha
Helix 33
AD6
A
493 509Right-handed alpha
Helix 34
AD7
A
544 558Right-handed alpha
Helix 35
AD8
A
562 581Right-handed alpha
Helix 36
AD9
A
597 601Right-handed 310
Helix 37
AE1
A
605 617Right-handed alpha
Helix 38
AE2
A
624 631Right-handed alpha
Helix 39
AE3
A
641 653Right-handed alpha
Helix 40
AE4
A
658 668Right-handed alpha
Helix 41
AE5
A
714 726Right-handed alpha
Helix 42
AE6
A
734 746Right-handed alpha
Helix 43
AE7
A
763 768Right-handed alpha
Helix 44
AE8
A
808 824Right-handed alpha
Helix 45
AE9
A
833 850Right-handed alpha
Helix 46
AF1
A
868 890Right-handed alpha
Helix 47
AF2
A
904 907Right-handed 310
Helix 48
AF3
A
908 913Right-handed alpha
Helix 49
AF4
A
915 922Right-handed alpha
Helix 50
AF5
A
924 931Right-handed alpha
Helix 51
AF6
A
934 948Right-handed alpha
Helix 52
AF7
A
972 985Right-handed alpha
Helix 53
AF8
A
988 999Right-handed alpha
Helix 54
AF9
A
1010 1016Right-handed alpha
Helix 55
AG1
A
1016 1021Right-handed alpha
Helix 56
AG2
A
1026 1034Right-handed alpha
Helix 57
AG3
A
1073 1078Right-handed alpha
Helix 58
AG4
A
1080 1085Right-handed alpha
Helix 59
AG5
A
1092 1104Right-handed alpha
Helix 60
AG6
A
1117 1122Right-handed 310
Helix 61
AG7
A
1123 1132Right-handed alpha
Helix 62
AG8
A
1195 1205Right-handed alpha
Helix 63
AG9
A
1205 1215Right-handed alpha
Helix 64
AH1
A
1282 1297Right-handed alpha
Helix 65
AH2
A
1297 1302Right-handed alpha
Helix 66
AH3
A
1303 1305Right-handed 310
Helix 67
AH4
A
1315 1331Right-handed alpha
Helix 68
AH5
A
1350 1355Right-handed alpha
Helix 69
AH6
A
1355 1368Right-handed alpha
Helix 70
AH7
A
1399 1411Right-handed alpha
Helix 71
AH8
A
1416 1428Right-handed alpha
Helix 72
AH9
A
1453 1466Right-handed alpha
Helix 73
AI1
A
1466 1480Right-handed alpha
Helix 74
AI2
A
1485 1500Right-handed alpha
Helix 75
AI3
A
1511 1517Right-handed 310
Helix 76
AI4
A
1523 1534Right-handed alpha
Helix 77
AI5
A
1535 1539Right-handed 310
Helix 78
AI6
A
1598 1608Right-handed alpha
Helix 79
AI7
A
1617 1640Right-handed alpha
Helix 80
AI8
A
1644 1655Right-handed alpha
Helix 81
AI9
A
1660 1677Right-handed alpha
Helix 82
AJ1
A
1701 1713Right-handed alpha
Helix 83
AJ2
A
1727 1739Right-handed alpha
Helix 84
AJ3
A
1739 1760Right-handed alpha
Helix 85
AJ4
A
1785 1799Right-handed alpha
Helix 86
AJ5
A
1803 1811Right-handed alpha
Helix 87
AJ6
A
1823 1827Right-handed 310
Helix 88
AJ7
A
1837 1851Right-handed alpha
Helix 89
AJ8
A
1852 1856Right-handed 310
Helix 90
AJ9
A
1860 1865Right-handed alpha
Helix 91
AK1
A
1927 1939Right-handed alpha
Helix 92
AK2
A
1941 1959Right-handed alpha
Helix 93
AK3
A
1964 1971Right-handed alpha
Helix 94
AK4
A
1975 1991Right-handed alpha
Helix 95
AK5
A
2010 2013Right-handed 310
Helix 96
AK6
A
2014 2028Right-handed alpha
Helix 97
AK7
A
2039 2044Right-handed alpha
Helix 98
AK8
A
2048 2053Right-handed alpha
Helix 99
AK9
A
2071 2084Right-handed alpha
Helix 100
AL1
A
2097 2102Right-handed alpha
Helix 101
AL2
A
2161 2179Right-handed alpha
Helix 102
AL3
A
2214 2231Right-handed alpha
Helix 103
AL4
A
2250 2256Right-handed alpha
Helix 104
AL5
A
2279 2289Right-handed alpha
Helix 105
AL6
A
2294 2303Right-handed alpha
Helix 106
AL7
A
2306 2331Right-handed alpha
Helix 107
AL8
A
2360 2364Right-handed 310
Helix 108
AL9
A
2377 2382Right-handed alpha
Helix 109
AM1
A
2391 2406Right-handed alpha
Helix 110
AM2
A
2407 2419Right-handed alpha
Helix 111
AM3
A
3608 3621Right-handed alpha
Helix 112
AM4
A
3632 3644Right-handed alpha
Helix 113
AM5
A
3646 3652Right-handed alpha
Helix 114
AM6
A
3654 3658Right-handed 310
Helix 115
AM7
B
6 11Right-handed alpha
Helix 116
AM8
B
62 72Right-handed alpha
Helix 117
AM9
B
160 171Right-handed alpha
Helix 118
AN1
B
181 206Right-handed alpha
Helix 119
AN2
B
221 237Right-handed alpha
Helix 120
AN3
B
237 243Right-handed alpha
Helix 121
AN4
B
251 258Right-handed alpha
Helix 122
AN5
B
296 315Right-handed alpha
Helix 123
AN6
B
349 361Right-handed alpha
Helix 124
AN7
B
411 423Right-handed alpha
Helix 125
AN8
B
444 460Right-handed alpha
Helix 126
AN9
B
478 486Right-handed 310
Helix 127
AO1
B
490 514Right-handed alpha
Helix 128
AO2
B
523 537Right-handed alpha
Helix 129
AO3
B
544 557Right-handed alpha
Helix 130
AO4
C
194 198Right-handed 310
Helix 131
AO5
C
218 226Right-handed alpha
Helix 132
AO6
C
275 285Right-handed alpha
Helix 133
AO7
C
296 314Right-handed alpha
Helix 134
AO8
C
327 341Right-handed alpha
Helix 135
AO9
C
376 379Right-handed 310
Helix 136
AP1
C
380 395Right-handed alpha
Helix 137
AP2
C
465 480Right-handed alpha
Helix 138
AP3
C
491 508Right-handed alpha
Helix 139
AP4
C
509 518Right-handed alpha
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There are 6 sheets in PDB entry 6L54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2128 2129first strand
Strand 2
A
2139 2140anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2153 2154first strand
Strand 2
A
2204 2205anti-parallel
Strand 3
A
2195 2196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2212 2213first strand
Strand 2
A
2342 2343anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
148 152anti-parallel
Strand 3
B
48 52parallel
Strand 4
B
209 211parallel
Strand 5
B
264 265parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 270first strand
Strand 2
B
334 337parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 260first strand
Strand 2
C
265 269anti-parallel
Strand 3
C
205 210parallel
Strand 4
C
317 321parallel
Strand 5
C
368 370parallel
Strand 6
C
423 424parallel
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