Analysis of interatomic Contacts of Structural Units in PDB entry:
6L5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L5D entry

There are 2 chains in PDB entry 6L5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 250
B
 SER 2HIS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6L5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
52 69Right-handed alpha
Helix 3
AA3
A
85 93Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
97 109Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
152 180Right-handed alpha
Helix 8
AA8
A
181 183Right-handed 310
Helix 9
AA9
A
208 222Right-handed alpha
Helix 10
AB1
B
24 26Right-handed 310
Helix 11
AB2
B
52 69Right-handed alpha
Helix 12
AB3
B
85 93Right-handed alpha
Helix 13
AB4
B
93 109Right-handed alpha
Helix 14
AB5
B
121 133Right-handed alpha
Helix 15
AB6
B
133 141Right-handed alpha
Helix 16
AB7
B
149 180Right-handed alpha
Helix 17
AB8
B
181 183Right-handed 310
Helix 18
AB9
B
208 222Right-handed alpha
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There are 6 sheets in PDB entry 6L5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
75 76anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
82 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
111 120anti-parallel
Strand 4
A
227 235anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
5 11anti-parallel
Strand 5
B
75 76anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
5 11anti-parallel
Strand 5
B
82 83anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
196 205anti-parallel
Strand 3
B
111 120anti-parallel
Strand 4
B
227 232anti-parallel
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