Analysis of interatomic Contacts of Structural Units in PDB entry:
6L5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L5M entry

There are 5 chains in PDB entry 6L5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 188ILE 563
B
 PHE 188ILE 563
C
 PHE 188ILE 563
D
 PHE 188ILE 563
E
 PHE 188ILE 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 6L5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
194 204Right-handed alpha
Helix 2
AA2
A
210 222Right-handed alpha
Helix 3
AA3
A
237 250Right-handed alpha
Helix 4
AA4
A
269 284Right-handed alpha
Helix 5
AA5
A
297 308Right-handed alpha
Helix 6
AA6
A
315 325Right-handed alpha
Helix 7
AA7
A
340 347Right-handed alpha
Helix 8
AA8
A
349 361Right-handed alpha
Helix 9
AA9
A
379 389Right-handed alpha
Helix 10
AB1
A
422 435Right-handed alpha
Helix 11
AB2
A
447 456Right-handed alpha
Helix 12
AB3
A
460 462Right-handed 310
Helix 13
AB4
A
472 485Right-handed alpha
Helix 14
AB5
A
517 526Right-handed alpha
Helix 15
AB6
A
542 544Right-handed 310
Helix 16
AB7
A
545 557Right-handed alpha
Helix 17
AB8
B
194 204Right-handed alpha
Helix 18
AB9
B
210 222Right-handed alpha
Helix 19
AC1
B
237 250Right-handed alpha
Helix 20
AC2
B
269 284Right-handed alpha
Helix 21
AC3
B
297 308Right-handed alpha
Helix 22
AC4
B
315 325Right-handed alpha
Helix 23
AC5
B
340 347Right-handed alpha
Helix 24
AC6
B
349 361Right-handed alpha
Helix 25
AC7
B
379 389Right-handed alpha
Helix 26
AC8
B
422 435Right-handed alpha
Helix 27
AC9
B
447 456Right-handed alpha
Helix 28
AD1
B
460 462Right-handed 310
Helix 29
AD2
B
472 485Right-handed alpha
Helix 30
AD3
B
495 499Right-handed alpha
Helix 31
AD4
B
517 526Right-handed alpha
Helix 32
AD5
B
542 544Right-handed 310
Helix 33
AD6
B
545 557Right-handed alpha
Helix 34
AD7
C
194 204Right-handed alpha
Helix 35
AD8
C
210 222Right-handed alpha
Helix 36
AD9
C
237 250Right-handed alpha
Helix 37
AE1
C
269 284Right-handed alpha
Helix 38
AE2
C
297 308Right-handed alpha
Helix 39
AE3
C
315 325Right-handed alpha
Helix 40
AE4
C
340 347Right-handed alpha
Helix 41
AE5
C
349 361Right-handed alpha
Helix 42
AE6
C
379 389Right-handed alpha
Helix 43
AE7
C
422 435Right-handed alpha
Helix 44
AE8
C
447 456Right-handed alpha
Helix 45
AE9
C
460 462Right-handed 310
Helix 46
AF1
C
472 485Right-handed alpha
Helix 47
AF2
C
517 526Right-handed alpha
Helix 48
AF3
C
542 544Right-handed 310
Helix 49
AF4
C
545 557Right-handed alpha
Helix 50
AF5
D
194 204Right-handed alpha
Helix 51
AF6
D
210 222Right-handed alpha
Helix 52
AF7
D
237 250Right-handed alpha
Helix 53
AF8
D
269 282Right-handed alpha
Helix 54
AF9
D
297 308Right-handed alpha
Helix 55
AG1
D
315 325Right-handed alpha
Helix 56
AG2
D
340 347Right-handed alpha
Helix 57
AG3
D
349 361Right-handed alpha
Helix 58
AG4
D
379 389Right-handed alpha
Helix 59
AG5
D
422 435Right-handed alpha
Helix 60
AG6
D
447 456Right-handed alpha
Helix 61
AG7
D
472 485Right-handed alpha
Helix 62
AG8
D
495 499Right-handed alpha
Helix 63
AG9
D
517 526Right-handed alpha
Helix 64
AH1
D
542 544Right-handed 310
Helix 65
AH2
D
545 557Right-handed alpha
Helix 66
AH3
E
194 204Right-handed alpha
Helix 67
AH4
E
210 222Right-handed alpha
Helix 68
AH5
E
237 250Right-handed alpha
Helix 69
AH6
E
269 284Right-handed alpha
Helix 70
AH7
E
297 308Right-handed alpha
Helix 71
AH8
E
315 325Right-handed alpha
Helix 72
AH9
E
340 347Right-handed alpha
Helix 73
AI1
E
349 361Right-handed alpha
Helix 74
AI2
E
379 389Right-handed alpha
Helix 75
AI3
E
422 435Right-handed alpha
Helix 76
AI4
E
447 457Right-handed alpha
Helix 77
AI5
E
460 462Right-handed 310
Helix 78
AI6
E
472 486Right-handed alpha
Helix 79
AI7
E
495 499Right-handed alpha
Helix 80
AI8
E
517 526Right-handed alpha
Helix 81
AI9
E
542 544Right-handed 310
Helix 82
AJ1
E
545 557Right-handed alpha
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There are 10 sheets in PDB entry 6L5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
311 314parallel
Strand 3
A
263 266parallel
Strand 4
A
335 338parallel
Strand 5
A
370 374parallel
Strand 6
A
226 228parallel
Strand 7
A
395 397parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
490 493parallel
Strand 3
A
441 444parallel
Strand 4
A
508 511parallel
Strand 5
A
535 541parallel
Strand 6
A
411 417parallel
Strand 7
A
561 563parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 292first strand
Strand 2
B
311 314parallel
Strand 3
B
263 266parallel
Strand 4
B
335 338parallel
Strand 5
B
370 374parallel
Strand 6
B
225 228parallel
Strand 7
B
394 397parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
490 494parallel
Strand 3
B
441 445parallel
Strand 4
B
508 511parallel
Strand 5
B
535 541parallel
Strand 6
B
411 417parallel
Strand 7
B
561 563parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 292first strand
Strand 2
C
311 314parallel
Strand 3
C
263 266parallel
Strand 4
C
335 338parallel
Strand 5
C
370 374parallel
Strand 6
C
226 228parallel
Strand 7
C
395 397parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
464 467first strand
Strand 2
C
490 494parallel
Strand 3
C
441 445parallel
Strand 4
C
508 511parallel
Strand 5
C
535 541parallel
Strand 6
C
411 417parallel
Strand 7
C
561 563parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 292first strand
Strand 2
D
311 314parallel
Strand 3
D
263 266parallel
Strand 4
D
335 338parallel
Strand 5
D
370 374parallel
Strand 6
D
226 228parallel
Strand 7
D
395 397parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
464 467first strand
Strand 2
D
490 494parallel
Strand 3
D
441 445parallel
Strand 4
D
508 511parallel
Strand 5
D
535 541parallel
Strand 6
D
411 417parallel
Strand 7
D
561 563parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 292first strand
Strand 2
E
311 314parallel
Strand 3
E
263 266parallel
Strand 4
E
335 338parallel
Strand 5
E
370 374parallel
Strand 6
E
226 228parallel
Strand 7
E
395 397parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
464 467first strand
Strand 2
E
490 494parallel
Strand 3
E
441 445parallel
Strand 4
E
508 511parallel
Strand 5
E
535 541parallel
Strand 6
E
411 417parallel
Strand 7
E
561 563parallel
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