Analysis of interatomic Contacts of Structural Units in PDB entry:
6L5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L5R entry

There is 1 chain in PDB entry 6L5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 12LYS 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6L5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 40Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
89 100Right-handed alpha
Helix 4
AA4
A
105 110Right-handed alpha
Helix 5
AA5
A
125 136Right-handed alpha
Helix 6
AA6
A
147 162Right-handed alpha
Helix 7
AA7
A
186 188Right-handed 310
Helix 8
AA8
A
189 194Right-handed 310
Helix 9
AA9
A
197 207Right-handed alpha
Helix 10
AB1
A
208 213Right-handed 310
Helix 11
AB2
A
221 234Right-handed alpha
Helix 12
AB3
A
253 257Right-handed 310
Helix 13
AB4
A
264 270Right-handed alpha
Helix 14
AB5
A
289 302Right-handed alpha
Helix 15
AB6
A
316 320Right-handed 310
Helix 16
AB7
A
323 338Right-handed alpha
Helix 17
AB8
A
350 356Right-handed alpha
Helix 18
AB9
A
368 379Right-handed alpha
Helix 19
AC1
A
390 402Right-handed alpha
Helix 20
AC2
A
408 411Right-handed 310
Helix 21
AC3
A
419 432Right-handed alpha
Helix 22
AC4
A
433 452Right-handed alpha
Helix 23
AC5
A
455 468Right-handed alpha
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There are 3 sheets in PDB entry 6L5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
43 51parallel
Strand 3
A
15 20parallel
Strand 4
A
116 122parallel
Strand 5
A
140 144parallel
Strand 6
A
216 218parallel
Strand 7
A
244 246parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
182 184anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
306 310parallel
Strand 3
A
277 281parallel
Strand 4
A
360 365parallel
Strand 5
A
381 384parallel
Strand 6
A
404 406parallel
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