Analysis of interatomic Contacts of Structural Units in PDB entry:
6L62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L62 entry

There are 3 chains in PDB entry 6L62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASN 1	ASN 212
H	GLN 213	VAL 432
A	ASN 42	LEU 231

There are 8 helices in PDB entry 6L62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	79	83	Right-handed 310
Helix 2	AA2	L	121	128	Right-handed alpha
Helix 3	AA3	L	183	188	Right-handed alpha
Helix 4	AA4	H	240	243	Right-handed 310
Helix 5	AA5	H	274	277	Right-handed 310
Helix 6	AA6	H	299	303	Right-handed 310
Helix 7	AA7	H	377	379	Right-handed 310
Helix 8	AA8	A	76	80	Right-handed alpha

There are 14 sheets in PDB entry 6L62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	62	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	215	218	first strand
Strand 2	H	230	237	anti-parallel
Strand 3	H	290	295	anti-parallel
Strand 4	H	280	285	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	222	224	first strand
Strand 2	H	328	332	parallel
Strand 3	H	304	309	anti-parallel
Strand 4	H	245	251	anti-parallel
Strand 5	H	257	264	anti-parallel
Strand 6	H	270	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	341	345	first strand
Strand 2	H	357	366	anti-parallel
Strand 3	H	395	404	anti-parallel
Strand 4	H	384	386	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	341	345	first strand
Strand 2	H	357	366	anti-parallel
Strand 3	H	395	404	anti-parallel
Strand 4	H	390	392	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	372	375	first strand
Strand 2	H	415	420	anti-parallel
Strand 3	H	425	430	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	57	first strand
Strand 2	A	209	222	anti-parallel
Strand 3	A	95	107	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	57	first strand
Strand 2	A	209	222	anti-parallel
Strand 3	A	95	107	anti-parallel
Strand 4	A	185	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	75	first strand
Strand 2	A	194	203	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	147	151	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	75	first strand
Strand 2	A	194	203	anti-parallel
Strand 3	A	164	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L62

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L62