Analysis of interatomic Contacts of Structural Units in PDB entry:
6L6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L6J entry

There is 1 chain in PDB entry 6L6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 669
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6L6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed 310
Helix 2
AA2
A
34 36Right-handed 310
Helix 3
AA3
A
37 52Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
82 95Right-handed alpha
Helix 6
AA6
A
107 111Right-handed 310
Helix 7
AA7
A
141 163Right-handed alpha
Helix 8
AA8
A
176 183Right-handed alpha
Helix 9
AA9
A
196 216Right-handed alpha
Helix 10
AB1
A
240 250Right-handed alpha
Helix 11
AB2
A
262 267Right-handed alpha
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
284 289Right-handed alpha
Helix 14
AB5
A
301 311Right-handed alpha
Helix 15
AB6
A
320 326Right-handed alpha
Helix 16
AB7
A
328 335Right-handed alpha
Helix 17
AB8
A
336 341Right-handed 310
Helix 18
AB9
A
348 356Right-handed alpha
Helix 19
AC1
A
397 411Right-handed alpha
Helix 20
AC2
A
426 431Right-handed alpha
Helix 21
AC3
A
436 439Right-handed 310
Helix 22
AC4
A
440 451Right-handed alpha
Helix 23
AC5
A
465 473Right-handed alpha
Helix 24
AC6
A
508 514Right-handed alpha
Helix 25
AC7
A
532 543Right-handed alpha
Helix 26
AC8
A
558 563Right-handed 310
Helix 27
AC9
A
566 578Right-handed alpha
Helix 28
AD1
A
623 633Right-handed alpha
Helix 29
AD2
A
645 648Right-handed 310
Helix 30
AD3
A
652 667Right-handed alpha
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There are 7 sheets in PDB entry 6L6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
55 62parallel
Strand 3
A
99 105parallel
Strand 4
A
166 171parallel
Strand 5
A
220 229parallel
Strand 6
A
255 261parallel
Strand 7
A
293 296parallel
Strand 8
A
316 319parallel
Strand 9
A
24 26parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
138 139parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
413 417parallel
Strand 3
A
390 394parallel
Strand 4
A
476 479parallel
Strand 5
A
641 643parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 485first strand
Strand 2
A
619 621anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
612 616parallel
Strand 3
A
522 527parallel
Strand 4
A
547 552parallel
Strand 5
A
580 582parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 590first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
605 609anti-parallel
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