Analysis of interatomic Contacts of Structural Units in PDB entry:
6L6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L6R entry

There are 3 chains in PDB entry 6L6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 19	PRO 630
B	ASP 20	HIS 631
C	TYR 78	LEU 115

There are 8 helices in PDB entry 6L6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	279	Right-handed 310
Helix 2	AA2	A	289	293	Right-handed 310
Helix 3	AA3	A	499	501	Right-handed 310
Helix 4	AA4	A	593	599	Right-handed 310
Helix 5	AA5	B	275	279	Right-handed 310
Helix 6	AA6	B	289	293	Right-handed 310
Helix 7	AA7	B	499	501	Right-handed 310
Helix 8	AA8	B	593	599	Right-handed 310

There are 36 sheets in PDB entry 6L6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	31	35	anti-parallel
Strand 3	A	22	26	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	59	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	88	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	108	113	anti-parallel
Strand 3	A	118	123	anti-parallel
Strand 4	A	130	133	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	174	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	205	210	anti-parallel
Strand 4	A	217	220	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	233	first strand
Strand 2	A	236	241	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	259	262	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	306	309	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	339	343	anti-parallel
Strand 3	A	329	335	anti-parallel
Strand 4	A	575	582	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	368	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	383	388	anti-parallel
Strand 4	A	395	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	411	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	426	431	anti-parallel
Strand 4	A	438	441	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	454	first strand
Strand 2	A	459	462	anti-parallel
Strand 3	A	471	475	anti-parallel
Strand 4	A	482	485	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	498	first strand
Strand 2	A	503	508	anti-parallel
Strand 3	A	513	518	anti-parallel
Strand 4	A	526	528	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	544	549	anti-parallel
Strand 3	A	554	559	anti-parallel
Strand 4	A	565	569	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	611	613	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	627	628	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	22	26	anti-parallel
Strand 4	B	271	274	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	88	92	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	118	123	anti-parallel
Strand 4	B	130	133	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	145	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	162	167	anti-parallel
Strand 4	B	174	177	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	217	220	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	233	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	306	309	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	354	first strand
Strand 2	B	339	343	anti-parallel
Strand 3	B	329	335	anti-parallel
Strand 4	B	575	582	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	368	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	384	387	anti-parallel
Strand 4	B	395	398	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	411	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	426	431	anti-parallel
Strand 4	B	438	441	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	454	first strand
Strand 2	B	459	462	anti-parallel
Strand 3	B	471	475	anti-parallel
Strand 4	B	482	485	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	498	first strand
Strand 2	B	503	508	anti-parallel
Strand 3	B	513	518	anti-parallel
Strand 4	B	526	528	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	544	549	anti-parallel
Strand 3	B	554	559	anti-parallel
Strand 4	B	565	569	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	611	613	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	620	first strand
Strand 2	B	627	628	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	87	first strand
Strand 2	C	100	105	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	139	147	anti-parallel
Strand 3	C	156	162	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	165	167	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	87	first strand
Strand 2	D	100	105	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	139	147	anti-parallel
Strand 3	D	155	162	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	165	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L6R