Analysis of interatomic Contacts of Structural Units in PDB entry:
6L88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L88 entry

There are 4 chains in PDB entry 6L88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 763ARG 983
B
 GLU 763ARG 983
C
 ALA 762ARG 983
D
 GLU 763ARG 983
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 6L88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
763 785Right-handed alpha
Helix 2
AA2
A
794 822Right-handed alpha
Helix 3
AA3
A
846 863Right-handed alpha
Helix 4
AA4
A
865 878Right-handed alpha
Helix 5
AA5
A
888 907Right-handed alpha
Helix 6
AA6
A
916 935Right-handed alpha
Helix 7
AA7
A
939 944Right-handed alpha
Helix 8
AA8
A
958 967Right-handed alpha
Helix 9
AA9
B
764 785Right-handed alpha
Helix 10
AB1
B
794 822Right-handed alpha
Helix 11
AB2
B
848 863Right-handed alpha
Helix 12
AB3
B
865 878Right-handed alpha
Helix 13
AB4
B
888 907Right-handed alpha
Helix 14
AB5
B
917 935Right-handed alpha
Helix 15
AB6
B
958 968Right-handed alpha
Helix 16
AB7
C
763 785Right-handed alpha
Helix 17
AB8
C
794 822Right-handed alpha
Helix 18
AB9
C
846 863Right-handed alpha
Helix 19
AC1
C
865 878Right-handed alpha
Helix 20
AC2
C
888 907Right-handed alpha
Helix 21
AC3
C
916 935Right-handed alpha
Helix 22
AC4
C
958 967Right-handed alpha
Helix 23
AC5
D
764 785Right-handed alpha
Helix 24
AC6
D
794 822Right-handed alpha
Helix 25
AC7
D
846 863Right-handed alpha
Helix 26
AC8
D
865 878Right-handed alpha
Helix 27
AC9
D
888 907Right-handed alpha
Helix 28
AD1
D
916 935Right-handed alpha
Helix 29
AD2
D
939 944Right-handed alpha
Helix 30
AD3
D
958 967Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6L88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 882first strand
Strand 2
D
976 978anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
976 978first strand
Strand 2
D
880 882anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 882first strand
Strand 2
C
976 978anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
976 978first strand
Strand 2
C
880 882anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il