Analysis of interatomic Contacts of Structural Units in PDB entry:
6L8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L8H entry

There are 4 chains in PDB entry 6L8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 74	ARG 539
B	ASP 75	ARG 539
C	ASP 75	ARG 539
D	ASN 74	ARG 539

There are 92 helices in PDB entry 6L8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	94	Right-handed alpha
Helix 2	AA2	A	97	109	Right-handed alpha
Helix 3	AA3	A	126	136	Right-handed alpha
Helix 4	AA4	A	143	149	Right-handed alpha
Helix 5	AA5	A	149	154	Right-handed alpha
Helix 6	AA6	A	161	173	Right-handed alpha
Helix 7	AA7	A	174	176	Right-handed 310
Helix 8	AA8	A	177	188	Right-handed alpha
Helix 9	AA9	A	188	207	Right-handed alpha
Helix 10	AB1	A	212	230	Right-handed alpha
Helix 11	AB2	A	240	259	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed 310
Helix 13	AB4	A	266	273	Right-handed alpha
Helix 14	AB5	A	273	305	Right-handed alpha
Helix 15	AB6	A	320	329	Right-handed alpha
Helix 16	AB7	A	333	365	Right-handed alpha
Helix 17	AB8	A	366	382	Right-handed alpha
Helix 18	AB9	A	387	393	Right-handed 310
Helix 19	AC1	A	394	408	Right-handed alpha
Helix 20	AC2	A	440	446	Right-handed alpha
Helix 21	AC3	A	457	461	Right-handed 310
Helix 22	AC4	A	482	486	Right-handed 310
Helix 23	AC5	A	489	507	Right-handed alpha
Helix 24	AC6	B	85	94	Right-handed alpha
Helix 25	AC7	B	97	109	Right-handed alpha
Helix 26	AC8	B	126	136	Right-handed alpha
Helix 27	AC9	B	143	149	Right-handed alpha
Helix 28	AD1	B	149	154	Right-handed alpha
Helix 29	AD2	B	161	173	Right-handed alpha
Helix 30	AD3	B	174	176	Right-handed 310
Helix 31	AD4	B	177	188	Right-handed alpha
Helix 32	AD5	B	188	207	Right-handed alpha
Helix 33	AD6	B	212	230	Right-handed alpha
Helix 34	AD7	B	240	259	Right-handed alpha
Helix 35	AD8	B	262	266	Right-handed 310
Helix 36	AD9	B	268	273	Right-handed alpha
Helix 37	AE1	B	273	304	Right-handed alpha
Helix 38	AE2	B	320	329	Right-handed alpha
Helix 39	AE3	B	333	365	Right-handed alpha
Helix 40	AE4	B	366	382	Right-handed alpha
Helix 41	AE5	B	387	393	Right-handed 310
Helix 42	AE6	B	394	408	Right-handed alpha
Helix 43	AE7	B	440	446	Right-handed alpha
Helix 44	AE8	B	457	461	Right-handed 310
Helix 45	AE9	B	482	486	Right-handed 310
Helix 46	AF1	B	489	507	Right-handed alpha
Helix 47	AF2	C	85	94	Right-handed alpha
Helix 48	AF3	C	97	109	Right-handed alpha
Helix 49	AF4	C	126	136	Right-handed alpha
Helix 50	AF5	C	143	154	Right-handed alpha
Helix 51	AF6	C	161	173	Right-handed alpha
Helix 52	AF7	C	174	176	Right-handed 310
Helix 53	AF8	C	177	188	Right-handed alpha
Helix 54	AF9	C	188	207	Right-handed alpha
Helix 55	AG1	C	212	230	Right-handed alpha
Helix 56	AG2	C	240	259	Right-handed alpha
Helix 57	AG3	C	262	265	Right-handed 310
Helix 58	AG4	C	266	273	Right-handed alpha
Helix 59	AG5	C	273	305	Right-handed alpha
Helix 60	AG6	C	320	328	Right-handed alpha
Helix 61	AG7	C	333	365	Right-handed alpha
Helix 62	AG8	C	366	382	Right-handed alpha
Helix 63	AG9	C	387	393	Right-handed 310
Helix 64	AH1	C	394	408	Right-handed alpha
Helix 65	AH2	C	440	446	Right-handed alpha
Helix 66	AH3	C	457	461	Right-handed 310
Helix 67	AH4	C	482	486	Right-handed 310
Helix 68	AH5	C	489	507	Right-handed alpha
Helix 69	AH6	D	85	94	Right-handed alpha
Helix 70	AH7	D	97	109	Right-handed alpha
Helix 71	AH8	D	126	136	Right-handed alpha
Helix 72	AH9	D	143	149	Right-handed alpha
Helix 73	AI1	D	149	154	Right-handed alpha
Helix 74	AI2	D	161	173	Right-handed alpha
Helix 75	AI3	D	174	176	Right-handed 310
Helix 76	AI4	D	177	188	Right-handed alpha
Helix 77	AI5	D	188	200	Right-handed alpha
Helix 78	AI6	D	200	207	Right-handed alpha
Helix 79	AI7	D	212	230	Right-handed alpha
Helix 80	AI8	D	240	257	Right-handed alpha
Helix 81	AI9	D	262	265	Right-handed 310
Helix 82	AJ1	D	266	273	Right-handed alpha
Helix 83	AJ2	D	273	305	Right-handed alpha
Helix 84	AJ3	D	320	329	Right-handed alpha
Helix 85	AJ4	D	333	366	Right-handed alpha
Helix 86	AJ5	D	366	382	Right-handed alpha
Helix 87	AJ6	D	387	393	Right-handed 310
Helix 88	AJ7	D	394	408	Right-handed alpha
Helix 89	AJ8	D	440	446	Right-handed alpha
Helix 90	AJ9	D	457	461	Right-handed 310
Helix 91	AK1	D	482	486	Right-handed 310
Helix 92	AK2	D	489	507	Right-handed alpha

There are 16 sheets in PDB entry 6L8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	116	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	435	439	parallel
Strand 4	A	413	418	anti-parallel
Strand 5	A	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	533	538	anti-parallel
Strand 3	A	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	526	528	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	119	124	anti-parallel
Strand 3	B	435	439	parallel
Strand 4	B	413	418	anti-parallel
Strand 5	B	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	533	538	anti-parallel
Strand 3	B	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	526	528	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	119	124	anti-parallel
Strand 3	C	435	439	parallel
Strand 4	C	413	418	anti-parallel
Strand 5	C	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	533	538	anti-parallel
Strand 3	C	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	424	first strand
Strand 2	C	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	526	528	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	116	first strand
Strand 2	D	119	124	anti-parallel
Strand 3	D	435	439	parallel
Strand 4	D	413	418	anti-parallel
Strand 5	D	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	533	538	anti-parallel
Strand 3	D	508	512	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	526	528	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L8H