Analysis of interatomic Contacts of Structural Units in PDB entry:
6L8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L8S entry

There are 2 chains in PDB entry 6L8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 654
B
 ALA 4LYS 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 96 helices in PDB entry 6L8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
50 62Right-handed alpha
Helix 5
AA5
A
76 93Right-handed alpha
Helix 6
AA6
A
95 108Right-handed alpha
Helix 7
AA7
A
111 126Right-handed alpha
Helix 8
AA8
A
127 130Right-handed 310
Helix 9
AA9
A
136 141Right-handed alpha
Helix 10
AB1
A
142 146Right-handed 310
Helix 11
AB2
A
147 160Right-handed alpha
Helix 12
AB3
A
176 180Right-handed 310
Helix 13
AB4
A
181 186Right-handed alpha
Helix 14
AB5
A
187 201Right-handed alpha
Helix 15
AB6
A
206 210Right-handed 310
Helix 16
AB7
A
215 238Right-handed alpha
Helix 17
AB8
A
285 303Right-handed alpha
Helix 18
AB9
A
319 330Right-handed alpha
Helix 19
AC1
A
336 341Right-handed alpha
Helix 20
AC2
A
342 353Right-handed alpha
Helix 21
AC3
A
366 370Right-handed 310
Helix 22
AC4
A
373 377Right-handed 310
Helix 23
AC5
A
378 396Right-handed alpha
Helix 24
AC6
A
402 407Right-handed alpha
Helix 25
AC7
A
434 437Right-handed 310
Helix 26
AC8
A
494 500Right-handed alpha
Helix 27
AC9
A
524 526Right-handed 310
Helix 28
AD1
A
535 548Right-handed alpha
Helix 29
AD2
A
567 569Right-handed 310
Helix 30
AD3
A
589 593Right-handed alpha
Helix 31
AD4
A
605 610Right-handed alpha
Helix 32
AD5
A
632 638Right-handed alpha
Helix 33
AD6
B
6 19Right-handed alpha
Helix 34
AD7
B
27 37Right-handed alpha
Helix 35
AD8
B
42 46Right-handed 310
Helix 36
AD9
B
50 62Right-handed alpha
Helix 37
AE1
B
76 93Right-handed alpha
Helix 38
AE2
B
95 108Right-handed alpha
Helix 39
AE3
B
111 126Right-handed alpha
Helix 40
AE4
B
127 130Right-handed 310
Helix 41
AE5
B
136 141Right-handed alpha
Helix 42
AE6
B
142 146Right-handed 310
Helix 43
AE7
B
147 160Right-handed alpha
Helix 44
AE8
B
176 180Right-handed 310
Helix 45
AE9
B
181 186Right-handed alpha
Helix 46
AF1
B
187 201Right-handed alpha
Helix 47
AF2
B
206 210Right-handed 310
Helix 48
AF3
B
215 238Right-handed alpha
Helix 49
AF4
B
285 303Right-handed alpha
Helix 50
AF5
B
319 330Right-handed alpha
Helix 51
AF6
B
336 341Right-handed alpha
Helix 52
AF7
B
342 353Right-handed alpha
Helix 53
AF8
B
366 370Right-handed 310
Helix 54
AF9
B
373 376Right-handed 310
Helix 55
AG1
B
377 396Right-handed alpha
Helix 56
AG2
B
402 407Right-handed alpha
Helix 57
AG3
B
434 437Right-handed 310
Helix 58
AG4
B
494 500Right-handed alpha
Helix 59
AG5
B
524 526Right-handed 310
Helix 60
AG6
B
535 548Right-handed alpha
Helix 61
AG7
B
567 569Right-handed 310
Helix 62
AG8
B
589 594Right-handed alpha
Helix 63
AG9
B
605 610Right-handed alpha
Helix 64
AH1
B
632 638Right-handed alpha
Helix 65
AH2
C
6 19Right-handed alpha
Helix 66
AH3
C
27 37Right-handed alpha
Helix 67
AH4
C
42 46Right-handed 310
Helix 68
AH5
C
50 62Right-handed alpha
Helix 69
AH6
C
76 93Right-handed alpha
Helix 70
AH7
C
95 108Right-handed alpha
Helix 71
AH8
C
111 126Right-handed alpha
Helix 72
AH9
C
127 130Right-handed 310
Helix 73
AI1
C
136 141Right-handed alpha
Helix 74
AI2
C
142 146Right-handed 310
Helix 75
AI3
C
147 160Right-handed alpha
Helix 76
AI4
C
176 180Right-handed 310
Helix 77
AI5
C
181 186Right-handed alpha
Helix 78
AI6
C
187 201Right-handed alpha
Helix 79
AI7
C
206 210Right-handed 310
Helix 80
AI8
C
215 238Right-handed alpha
Helix 81
AI9
C
285 303Right-handed alpha
Helix 82
AJ1
C
319 330Right-handed alpha
Helix 83
AJ2
C
336 341Right-handed alpha
Helix 84
AJ3
C
342 353Right-handed alpha
Helix 85
AJ4
C
366 370Right-handed 310
Helix 86
AJ5
C
373 377Right-handed 310
Helix 87
AJ6
C
378 396Right-handed alpha
Helix 88
AJ7
C
402 407Right-handed alpha
Helix 89
AJ8
C
434 437Right-handed 310
Helix 90
AJ9
C
494 500Right-handed alpha
Helix 91
AK1
C
524 526Right-handed 310
Helix 92
AK2
C
535 550Right-handed alpha
Helix 93
AK3
C
567 569Right-handed 310
Helix 94
AK4
C
589 593Right-handed alpha
Helix 95
AK5
C
605 610Right-handed alpha
Helix 96
AK6
C
632 638Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6L8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
448 457parallel
Strand 3
A
422 432anti-parallel
Strand 4
A
642 651parallel
Strand 5
A
578 588anti-parallel
Strand 6
A
474 484anti-parallel
Strand 7
A
503 512anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 419first strand
Strand 2
A
461 468anti-parallel
Strand 3
A
515 522anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
564 565parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
448 457parallel
Strand 3
B
422 432anti-parallel
Strand 4
B
642 652parallel
Strand 5
B
578 588anti-parallel
Strand 6
B
474 484anti-parallel
Strand 7
B
503 512anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 306first strand
Strand 2
B
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 419first strand
Strand 2
B
461 468anti-parallel
Strand 3
B
515 522anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 530first strand
Strand 2
B
564 565parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 167first strand
Strand 2
C
448 457parallel
Strand 3
C
422 432anti-parallel
Strand 4
C
642 651parallel
Strand 5
C
578 588anti-parallel
Strand 6
C
474 484anti-parallel
Strand 7
C
503 512anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 306first strand
Strand 2
C
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
411 419first strand
Strand 2
C
461 468anti-parallel
Strand 3
C
515 522anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
529 530first strand
Strand 2
C
564 565parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il