Analysis of interatomic Contacts of Structural Units in PDB entry:
6L8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L8U entry

There are 4 chains in PDB entry 6L8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29ALA 264
B
 ALA 29ALA 264
C
 ALA 28ALA 264
D
 PRO 26ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6L8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
78 88Right-handed alpha
Helix 6
AA6
A
112 122Right-handed alpha
Helix 7
AA7
A
138 151Right-handed alpha
Helix 8
AA8
A
152 154Right-handed 310
Helix 9
AA9
A
166 188Right-handed alpha
Helix 10
AB1
A
199 213Right-handed alpha
Helix 11
AB2
A
215 219Right-handed 310
Helix 12
AB3
A
220 224Right-handed 310
Helix 13
AB4
A
229 241Right-handed alpha
Helix 14
AB5
B
36 41Right-handed alpha
Helix 15
AB6
B
44 48Right-handed 310
Helix 16
AB7
B
53 59Right-handed alpha
Helix 17
AB8
B
78 88Right-handed alpha
Helix 18
AB9
B
112 122Right-handed alpha
Helix 19
AC1
B
138 152Right-handed alpha
Helix 20
AC2
B
166 189Right-handed alpha
Helix 21
AC3
B
200 213Right-handed alpha
Helix 22
AC4
B
215 219Right-handed 310
Helix 23
AC5
B
229 241Right-handed alpha
Helix 24
AC6
C
42 48Right-handed alpha
Helix 25
AC7
C
53 59Right-handed alpha
Helix 26
AC8
C
78 88Right-handed alpha
Helix 27
AC9
C
112 121Right-handed alpha
Helix 28
AD1
C
138 151Right-handed alpha
Helix 29
AD2
C
166 189Right-handed alpha
Helix 30
AD3
C
199 213Right-handed alpha
Helix 31
AD4
C
229 241Right-handed alpha
Helix 32
AD5
D
42 48Right-handed alpha
Helix 33
AD6
D
53 59Right-handed alpha
Helix 34
AD7
D
78 88Right-handed alpha
Helix 35
AD8
D
112 123Right-handed alpha
Helix 36
AD9
D
138 151Right-handed alpha
Helix 37
AE1
D
152 154Right-handed 310
Helix 38
AE2
D
166 188Right-handed alpha
Helix 39
AE3
D
200 213Right-handed alpha
Helix 40
AE4
D
215 219Right-handed 310
Helix 41
AE5
D
229 242Right-handed alpha
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There are 2 sheets in PDB entry 6L8U. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
104 110parallel
Strand 3
A
68 73parallel
Strand 4
A
158 164parallel
Strand 5
A
190 196parallel
Strand 6
A
259 263anti-parallel
Strand 7
A
245 250anti-parallel
Strand 8
B
245 250anti-parallel
Strand 9
B
259 263anti-parallel
Strand 10
B
190 196anti-parallel
Strand 11
B
158 164parallel
Strand 12
B
68 73parallel
Strand 13
B
104 110parallel
Strand 14
B
129 133parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
C
104 110parallel
Strand 3
C
68 73parallel
Strand 4
C
158 164parallel
Strand 5
C
190 196parallel
Strand 6
C
259 263anti-parallel
Strand 7
C
245 250anti-parallel
Strand 8
D
245 250anti-parallel
Strand 9
D
259 263anti-parallel
Strand 10
D
190 196anti-parallel
Strand 11
D
158 164parallel
Strand 12
D
68 73parallel
Strand 13
D
104 110parallel
Strand 14
D
129 133parallel
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