Analysis of interatomic Contacts of Structural Units in PDB entry:
6L96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L96 entry

There are 3 chains in PDB entry 6L96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 203MET 467
B
 LEU 203MET 467
C
 ARG 686GLN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6L96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
203 219Right-handed alpha
Helix 2
AA2
A
222 230Right-handed alpha
Helix 3
AA3
A
244 250Right-handed alpha
Helix 4
AA4
A
268 292Right-handed alpha
Helix 5
AA5
A
301 322Right-handed alpha
Helix 6
AA6
A
333 335Right-handed 310
Helix 7
AA7
A
341 347Right-handed alpha
Helix 8
AA8
A
350 354Right-handed 310
Helix 9
AA9
A
355 368Right-handed alpha
Helix 10
AB1
A
371 384Right-handed alpha
Helix 11
AB2
A
393 416Right-handed alpha
Helix 12
AB3
A
421 428Right-handed alpha
Helix 13
AB4
A
428 451Right-handed alpha
Helix 14
AB5
A
457 465Right-handed alpha
Helix 15
AB6
B
205 218Right-handed alpha
Helix 16
AB7
B
221 229Right-handed alpha
Helix 17
AB8
B
243 249Right-handed alpha
Helix 18
AB9
B
268 292Right-handed alpha
Helix 19
AC1
B
301 322Right-handed alpha
Helix 20
AC2
B
333 335Right-handed 310
Helix 21
AC3
B
341 347Right-handed alpha
Helix 22
AC4
B
350 354Right-handed 310
Helix 23
AC5
B
355 368Right-handed alpha
Helix 24
AC6
B
371 384Right-handed alpha
Helix 25
AC7
B
393 416Right-handed alpha
Helix 26
AC8
B
421 451Right-handed alpha
Helix 27
AC9
B
457 465Right-handed alpha
Helix 28
AD1
C
687 694Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6L96. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
337 340parallel
Strand 3
A
329 332anti-parallel
Strand 4
A
325 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
337 340parallel
Strand 3
B
329 332anti-parallel
Strand 4
B
325 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il