Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L9F entry

There are 6 chains in PDB entry 6L9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 210LEU 359
A
 GLU 361LYS 426
C
 GLN 189PRO 205
B
 SER 206LEU 359
B
 GLU 361LYS 426
D
 VAL 190PRO 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6L9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
261 267Right-handed 310
Helix 2
AA2
A
273 281Right-handed alpha
Helix 3
AA3
A
282 284Right-handed 310
Helix 4
AA4
A
360 373Right-handed alpha
Helix 5
AA5
A
375 384Right-handed alpha
Helix 6
AA6
C
191 195Right-handed 310
Helix 7
AA7
C
198 203Right-handed 310
Helix 8
AA8
B
261 267Right-handed 310
Helix 9
AA9
B
273 281Right-handed alpha
Helix 10
AB1
B
282 284Right-handed 310
Helix 11
AB2
B
360 372Right-handed alpha
Helix 12
AB3
B
375 385Right-handed alpha
Helix 13
AB4
D
198 203Right-handed 310
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There are 4 sheets in PDB entry 6L9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
349 358anti-parallel
Strand 3
A
305 315anti-parallel
Strand 4
A
218 229anti-parallel
Strand 5
A
234 243anti-parallel
Strand 6
B
234 244anti-parallel
Strand 7
B
218 231anti-parallel
Strand 8
B
305 315anti-parallel
Strand 9
B
349 353anti-parallel
Strand 10
B
344 346anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
349 358anti-parallel
Strand 3
A
305 315anti-parallel
Strand 4
A
218 229anti-parallel
Strand 5
A
234 243anti-parallel
Strand 6
B
234 244anti-parallel
Strand 7
B
218 231anti-parallel
Strand 8
B
305 315anti-parallel
Strand 9
B
357 358anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
418 425parallel
Strand 3
A
286 293anti-parallel
Strand 4
A
400 410parallel
Strand 5
A
386 394anti-parallel
Strand 6
A
321 329anti-parallel
Strand 7
A
332 341anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 259first strand
Strand 2
B
418 425parallel
Strand 3
B
286 293anti-parallel
Strand 4
B
400 410parallel
Strand 5
B
386 394anti-parallel
Strand 6
B
320 329anti-parallel
Strand 7
B
332 342anti-parallel
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