Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L9I entry

There are 6 chains in PDB entry 6L9I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 36	LYS 373
B	VAL 36	LYS 373
C	VAL 36	LYS 373
D	VAL 36	LYS 373
E	VAL 36	LYS 373
F	VAL 36	LYS 373

There are 60 helices in PDB entry 6L9I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	55	Right-handed 310
Helix 2	AA2	A	161	165	Right-handed 310
Helix 3	AA3	A	168	174	Right-handed alpha
Helix 4	AA4	A	176	185	Right-handed alpha
Helix 5	AA5	A	187	194	Right-handed 310
Helix 6	AA6	A	209	214	Right-handed alpha
Helix 7	AA7	A	229	233	Right-handed 310
Helix 8	AA8	A	345	352	Right-handed alpha
Helix 9	AA9	A	353	362	Right-handed alpha
Helix 10	AB1	A	364	369	Right-handed alpha
Helix 11	AB2	B	53	55	Right-handed 310
Helix 12	AB3	B	161	165	Right-handed 310
Helix 13	AB4	B	168	174	Right-handed alpha
Helix 14	AB5	B	176	185	Right-handed alpha
Helix 15	AB6	B	187	192	Right-handed 310
Helix 16	AB7	B	209	214	Right-handed alpha
Helix 17	AB8	B	229	233	Right-handed 310
Helix 18	AB9	B	345	352	Right-handed alpha
Helix 19	AC1	B	353	362	Right-handed alpha
Helix 20	AC2	B	364	369	Right-handed alpha
Helix 21	AC3	C	53	55	Right-handed 310
Helix 22	AC4	C	161	165	Right-handed 310
Helix 23	AC5	C	168	174	Right-handed alpha
Helix 24	AC6	C	176	185	Right-handed alpha
Helix 25	AC7	C	188	194	Right-handed 310
Helix 26	AC8	C	209	214	Right-handed alpha
Helix 27	AC9	C	229	233	Right-handed 310
Helix 28	AD1	C	345	352	Right-handed alpha
Helix 29	AD2	C	353	362	Right-handed alpha
Helix 30	AD3	C	364	369	Right-handed alpha
Helix 31	AD4	D	53	55	Right-handed 310
Helix 32	AD5	D	161	165	Right-handed 310
Helix 33	AD6	D	168	174	Right-handed alpha
Helix 34	AD7	D	176	185	Right-handed alpha
Helix 35	AD8	D	187	194	Right-handed 310
Helix 36	AD9	D	209	214	Right-handed alpha
Helix 37	AE1	D	229	233	Right-handed 310
Helix 38	AE2	D	345	352	Right-handed alpha
Helix 39	AE3	D	353	362	Right-handed alpha
Helix 40	AE4	D	364	369	Right-handed alpha
Helix 41	AE5	E	53	55	Right-handed 310
Helix 42	AE6	E	161	165	Right-handed 310
Helix 43	AE7	E	168	174	Right-handed alpha
Helix 44	AE8	E	176	185	Right-handed alpha
Helix 45	AE9	E	187	194	Right-handed 310
Helix 46	AF1	E	209	214	Right-handed alpha
Helix 47	AF2	E	229	233	Right-handed 310
Helix 48	AF3	E	345	352	Right-handed alpha
Helix 49	AF4	E	353	362	Right-handed alpha
Helix 50	AF5	E	364	369	Right-handed alpha
Helix 51	AF6	F	53	55	Right-handed 310
Helix 52	AF7	F	161	165	Right-handed 310
Helix 53	AF8	F	168	174	Right-handed alpha
Helix 54	AF9	F	176	185	Right-handed alpha
Helix 55	AG1	F	187	194	Right-handed 310
Helix 56	AG2	F	209	214	Right-handed alpha
Helix 57	AG3	F	229	233	Right-handed 310
Helix 58	AG4	F	345	352	Right-handed alpha
Helix 59	AG5	F	353	362	Right-handed alpha
Helix 60	AG6	F	364	369	Right-handed alpha

There are 30 sheets in PDB entry 6L9I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	329	335	anti-parallel
Strand 5	A	258	264	anti-parallel
Strand 6	A	241	246	anti-parallel
Strand 7	A	236	238	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	80	86	anti-parallel
Strand 4	A	140	155	anti-parallel
Strand 5	A	91	96	anti-parallel
Strand 6	A	201	202	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	101	115	anti-parallel
Strand 3	A	131	134	anti-parallel
Strand 4	A	227	228	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	140	155	anti-parallel
Strand 4	A	101	115	anti-parallel
Strand 5	A	131	134	anti-parallel
Strand 6	A	227	228	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	306	first strand
Strand 2	A	288	294	anti-parallel
Strand 3	A	318	323	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	343	344	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	280	286	anti-parallel
Strand 4	B	329	335	anti-parallel
Strand 5	B	258	264	anti-parallel
Strand 6	B	241	246	anti-parallel
Strand 7	B	236	237	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	80	86	anti-parallel
Strand 4	B	140	155	anti-parallel
Strand 5	B	91	96	anti-parallel
Strand 6	B	201	202	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	101	115	anti-parallel
Strand 3	B	131	134	anti-parallel
Strand 4	B	227	228	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	140	155	anti-parallel
Strand 4	B	101	115	anti-parallel
Strand 5	B	131	134	anti-parallel
Strand 6	B	227	228	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	306	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	318	323	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	343	344	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	309	313	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	329	335	anti-parallel
Strand 5	C	258	264	anti-parallel
Strand 6	C	241	246	anti-parallel
Strand 7	C	236	237	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	80	86	anti-parallel
Strand 4	C	140	155	anti-parallel
Strand 5	C	91	96	anti-parallel
Strand 6	C	201	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	127	first strand
Strand 2	C	101	115	anti-parallel
Strand 3	C	131	134	anti-parallel
Strand 4	C	227	228	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	140	155	anti-parallel
Strand 4	C	101	115	anti-parallel
Strand 5	C	131	134	anti-parallel
Strand 6	C	227	228	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	288	294	anti-parallel
Strand 3	C	318	323	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	343	344	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	280	286	anti-parallel
Strand 4	D	329	335	anti-parallel
Strand 5	D	258	264	anti-parallel
Strand 6	D	241	246	anti-parallel
Strand 7	D	236	238	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	63	68	anti-parallel
Strand 3	D	80	86	anti-parallel
Strand 4	D	140	155	anti-parallel
Strand 5	D	91	96	anti-parallel
Strand 6	D	201	202	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	127	first strand
Strand 2	D	101	115	anti-parallel
Strand 3	D	131	134	anti-parallel
Strand 4	D	227	228	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	140	155	anti-parallel
Strand 4	D	101	115	anti-parallel
Strand 5	D	131	134	anti-parallel
Strand 6	D	227	228	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	305	first strand
Strand 2	D	289	294	anti-parallel
Strand 3	D	318	323	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	343	344	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	309	313	anti-parallel
Strand 3	E	280	286	anti-parallel
Strand 4	E	329	335	anti-parallel
Strand 5	E	258	264	anti-parallel
Strand 6	E	241	246	anti-parallel
Strand 7	E	236	238	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	63	68	anti-parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	140	155	anti-parallel
Strand 5	E	91	96	anti-parallel
Strand 6	E	201	202	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	127	first strand
Strand 2	E	101	115	anti-parallel
Strand 3	E	131	134	anti-parallel
Strand 4	E	227	228	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	167	first strand
Strand 2	E	91	96	anti-parallel
Strand 3	E	140	155	anti-parallel
Strand 4	E	101	115	anti-parallel
Strand 5	E	131	134	anti-parallel
Strand 6	E	227	228	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	305	first strand
Strand 2	E	289	294	anti-parallel
Strand 3	E	318	323	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	343	344	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	309	313	anti-parallel
Strand 3	F	280	286	anti-parallel
Strand 4	F	329	335	anti-parallel
Strand 5	F	258	264	anti-parallel
Strand 6	F	241	246	anti-parallel
Strand 7	F	236	237	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	63	68	anti-parallel
Strand 3	F	80	86	anti-parallel
Strand 4	F	140	155	anti-parallel
Strand 5	F	91	96	anti-parallel
Strand 6	F	201	202	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	127	first strand
Strand 2	F	101	115	anti-parallel
Strand 3	F	131	134	anti-parallel
Strand 4	F	227	228	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	167	first strand
Strand 2	F	91	96	anti-parallel
Strand 3	F	140	155	anti-parallel
Strand 4	F	101	115	anti-parallel
Strand 5	F	131	134	anti-parallel
Strand 6	F	227	228	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	306	first strand
Strand 2	F	288	294	anti-parallel
Strand 3	F	318	323	anti-parallel
Strand 4	F	269	274	anti-parallel
Strand 5	F	343	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L9I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9I