Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L9J entry

There are 12 chains in PDB entry 6L9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 454	LYS 667
B	ALA 302	VAL 395
C	PRO 300	ASP 396
D	GLU 455	LYS 667
E	PRO 300	LYS 398
F	ALA 302	ASP 396
G	GLU 455	ASP 668
H	ALA 302	LYS 398
I	ALA 302	ASP 396
J	SER 454	ASP 666
K	ALA 302	VAL 395
L	ALA 302	ASP 396

There are 82 helices in PDB entry 6L9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	487	496	Right-handed alpha
Helix 2	AA2	A	506	524	Right-handed alpha
Helix 3	AA3	A	571	583	Right-handed alpha
Helix 4	AA4	A	588	611	Right-handed alpha
Helix 5	AA5	A	622	629	Right-handed alpha
Helix 6	AA6	A	641	648	Right-handed alpha
Helix 7	AA7	A	656	665	Right-handed alpha
Helix 8	AA8	B	308	312	Right-handed 310
Helix 9	AA9	B	320	327	Right-handed alpha
Helix 10	AB1	B	328	331	Right-handed 310
Helix 11	AB2	B	339	357	Right-handed alpha
Helix 12	AB3	B	363	371	Right-handed alpha
Helix 13	AB4	B	374	388	Right-handed alpha
Helix 14	AB5	C	308	312	Right-handed 310
Helix 15	AB6	C	320	327	Right-handed alpha
Helix 16	AB7	C	339	357	Right-handed alpha
Helix 17	AB8	C	363	371	Right-handed alpha
Helix 18	AB9	C	374	388	Right-handed alpha
Helix 19	AC1	D	487	499	Right-handed alpha
Helix 20	AC2	D	502	523	Right-handed alpha
Helix 21	AC3	D	527	532	Right-handed alpha
Helix 22	AC4	D	571	583	Right-handed alpha
Helix 23	AC5	D	588	610	Right-handed alpha
Helix 24	AC6	D	622	628	Right-handed alpha
Helix 25	AC7	D	634	638	Right-handed 310
Helix 26	AC8	D	641	646	Right-handed alpha
Helix 27	AC9	D	656	665	Right-handed alpha
Helix 28	AD1	E	308	312	Right-handed 310
Helix 29	AD2	E	320	327	Right-handed alpha
Helix 30	AD3	E	328	331	Right-handed 310
Helix 31	AD4	E	341	355	Right-handed alpha
Helix 32	AD5	E	363	371	Right-handed alpha
Helix 33	AD6	E	374	388	Right-handed alpha
Helix 34	AD7	F	308	312	Right-handed 310
Helix 35	AD8	F	320	327	Right-handed alpha
Helix 36	AD9	F	328	331	Right-handed 310
Helix 37	AE1	F	339	357	Right-handed alpha
Helix 38	AE2	F	363	371	Right-handed alpha
Helix 39	AE3	F	374	388	Right-handed alpha
Helix 40	AE4	G	465	470	Right-handed alpha
Helix 41	AE5	G	487	496	Right-handed alpha
Helix 42	AE6	G	507	522	Right-handed alpha
Helix 43	AE7	G	527	532	Right-handed alpha
Helix 44	AE8	G	571	583	Right-handed alpha
Helix 45	AE9	G	588	611	Right-handed alpha
Helix 46	AF1	G	622	628	Right-handed alpha
Helix 47	AF2	G	641	646	Right-handed alpha
Helix 48	AF3	G	656	666	Right-handed alpha
Helix 49	AF4	H	308	312	Right-handed 310
Helix 50	AF5	H	320	327	Right-handed alpha
Helix 51	AF6	H	328	331	Right-handed 310
Helix 52	AF7	H	335	338	Right-handed 310
Helix 53	AF8	H	339	357	Right-handed alpha
Helix 54	AF9	H	363	371	Right-handed alpha
Helix 55	AG1	H	374	388	Right-handed alpha
Helix 56	AG2	I	308	312	Right-handed 310
Helix 57	AG3	I	320	327	Right-handed alpha
Helix 58	AG4	I	328	331	Right-handed 310
Helix 59	AG5	I	339	355	Right-handed alpha
Helix 60	AG6	I	363	371	Right-handed alpha
Helix 61	AG7	I	374	388	Right-handed alpha
Helix 62	AG8	J	487	496	Right-handed alpha
Helix 63	AG9	J	509	524	Right-handed alpha
Helix 64	AH1	J	527	532	Right-handed alpha
Helix 65	AH2	J	571	583	Right-handed alpha
Helix 66	AH3	J	588	611	Right-handed alpha
Helix 67	AH4	J	624	629	Right-handed alpha
Helix 68	AH5	J	634	638	Right-handed 310
Helix 69	AH6	J	641	646	Right-handed alpha
Helix 70	AH7	J	656	665	Right-handed alpha
Helix 71	AH8	K	308	312	Right-handed 310
Helix 72	AH9	K	320	327	Right-handed alpha
Helix 73	AI1	K	328	331	Right-handed 310
Helix 74	AI2	K	339	356	Right-handed alpha
Helix 75	AI3	K	363	371	Right-handed alpha
Helix 76	AI4	K	374	388	Right-handed alpha
Helix 77	AI5	L	308	312	Right-handed 310
Helix 78	AI6	L	320	327	Right-handed alpha
Helix 79	AI7	L	328	332	Right-handed 310
Helix 80	AI8	L	339	355	Right-handed alpha
Helix 81	AI9	L	363	371	Right-handed alpha
Helix 82	AJ1	L	374	388	Right-handed alpha

There are 8 sheets in PDB entry 6L9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	464	first strand
Strand 2	A	473	480	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	552	first strand
Strand 2	A	555	564	anti-parallel
Strand 3	A	651	654	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	464	first strand
Strand 2	D	473	480	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	552	first strand
Strand 2	D	555	564	anti-parallel
Strand 3	D	651	654	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	457	464	first strand
Strand 2	G	473	480	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	543	552	first strand
Strand 2	G	555	564	anti-parallel
Strand 3	G	651	654	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	457	464	first strand
Strand 2	J	473	480	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	543	552	first strand
Strand 2	J	555	564	anti-parallel
Strand 3	J	651	654	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9J