Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L9L entry

There are 8 chains in PDB entry 6L9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	GLY 175
C	ALA 1	SER 198
D	ALA 1	ASP 239
B	SER 1	PHE 9
E	GLY 1	GLY 175
G	ALA 1	SER 198
H	ALA 1	ASP 239
F	SER 1	PHE 9

There are 22 helices in PDB entry 6L9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	56	86	Right-handed alpha
Helix 3	AA3	A	137	151	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	174	Right-handed alpha
Helix 6	AA6	C	78	82	Right-handed 310
Helix 7	AA7	C	180	185	Right-handed alpha
Helix 8	AA8	D	80	84	Right-handed 310
Helix 9	AA9	D	111	115	Right-handed 310
Helix 10	AB1	D	126	134	Right-handed alpha
Helix 11	AB2	D	193	198	Right-handed alpha
Helix 12	AB3	E	49	53	Right-handed 310
Helix 13	AB4	E	56	86	Right-handed alpha
Helix 14	AB5	E	137	151	Right-handed alpha
Helix 15	AB6	E	151	162	Right-handed alpha
Helix 16	AB7	E	162	174	Right-handed alpha
Helix 17	AB8	G	78	82	Right-handed 310
Helix 18	AB9	G	180	185	Right-handed alpha
Helix 19	AC1	H	80	84	Right-handed 310
Helix 20	AC2	H	111	115	Right-handed 310
Helix 21	AC3	H	126	134	Right-handed alpha
Helix 22	AC4	H	193	198	Right-handed alpha

There are 20 sheets in PDB entry 6L9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	102	107	parallel
Strand 3	C	83	91	anti-parallel
Strand 4	C	30	37	anti-parallel
Strand 5	C	44	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	60	63	anti-parallel
Strand 4	C	54	55	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	165	174	anti-parallel
Strand 4	C	150	152	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	165	174	anti-parallel
Strand 4	C	156	160	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	65	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	104	109	parallel
Strand 3	D	85	92	anti-parallel
Strand 4	D	29	36	anti-parallel
Strand 5	D	40	47	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	104	109	parallel
Strand 3	D	85	92	anti-parallel
Strand 4	D	99	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	202	209	anti-parallel
Strand 4	D	228	235	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	31	37	anti-parallel
Strand 3	E	21	28	anti-parallel
Strand 4	E	3	12	anti-parallel
Strand 5	E	94	103	anti-parallel
Strand 6	E	109	118	anti-parallel
Strand 7	E	121	126	anti-parallel
Strand 8	E	133	135	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	102	107	parallel
Strand 3	G	83	91	anti-parallel
Strand 4	G	30	37	anti-parallel
Strand 5	G	44	49	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	22	first strand
Strand 2	G	69	74	anti-parallel
Strand 3	G	60	63	anti-parallel
Strand 4	G	54	55	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	152	first strand
Strand 2	G	165	174	anti-parallel
Strand 3	G	129	134	anti-parallel
Strand 4	G	116	122	anti-parallel
Strand 5	H	119	124	anti-parallel
Strand 6	H	135	145	anti-parallel
Strand 7	H	183	192	anti-parallel
Strand 8	H	165	167	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	160	first strand
Strand 2	G	165	174	anti-parallel
Strand 3	G	129	134	anti-parallel
Strand 4	G	116	122	anti-parallel
Strand 5	H	119	124	anti-parallel
Strand 6	H	135	145	anti-parallel
Strand 7	H	183	192	anti-parallel
Strand 8	H	172	173	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	63	65	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	104	109	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	29	36	anti-parallel
Strand 5	H	40	47	anti-parallel
Strand 6	H	54	55	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	104	109	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	99	100	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	161	first strand
Strand 2	H	150	156	anti-parallel
Strand 3	H	202	209	anti-parallel
Strand 4	H	228	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L9L