Analysis of interatomic Contacts of Structural Units in PDB entry:
6LAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LAD entry

There are 6 chains in PDB entry 6LAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 63GLU 313
B
 SER 64ALA 311
C
 SER 63GLU 313
D
 SER 64ALA 311
E
 SER 63ALA 311
F
 SER 64PRO 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6LAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 81Right-handed alpha
Helix 2
AA2
A
83 85Right-handed 310
Helix 3
AA3
A
86 91Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
99 122Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
146 166Right-handed alpha
Helix 9
AA9
A
180 184Right-handed 310
Helix 10
AB1
A
212 225Right-handed alpha
Helix 11
AB2
B
65 81Right-handed alpha
Helix 12
AB3
B
83 85Right-handed 310
Helix 13
AB4
B
86 94Right-handed alpha
Helix 14
AB5
B
99 122Right-handed alpha
Helix 15
AB6
B
128 132Right-handed 310
Helix 16
AB7
B
134 138Right-handed 310
Helix 17
AB8
B
146 166Right-handed alpha
Helix 18
AB9
B
180 184Right-handed 310
Helix 19
AC1
B
212 225Right-handed alpha
Helix 20
AC2
C
64 81Right-handed alpha
Helix 21
AC3
C
83 85Right-handed 310
Helix 22
AC4
C
86 91Right-handed alpha
Helix 23
AC5
C
92 94Right-handed 310
Helix 24
AC6
C
99 122Right-handed alpha
Helix 25
AC7
C
128 132Right-handed 310
Helix 26
AC8
C
134 138Right-handed 310
Helix 27
AC9
C
146 165Right-handed alpha
Helix 28
AD1
C
166 168Right-handed 310
Helix 29
AD2
C
180 184Right-handed 310
Helix 30
AD3
C
212 225Right-handed alpha
Helix 31
AD4
D
65 81Right-handed alpha
Helix 32
AD5
D
83 85Right-handed 310
Helix 33
AD6
D
86 93Right-handed alpha
Helix 34
AD7
D
99 121Right-handed alpha
Helix 35
AD8
D
128 132Right-handed 310
Helix 36
AD9
D
134 138Right-handed 310
Helix 37
AE1
D
146 165Right-handed alpha
Helix 38
AE2
D
180 184Right-handed 310
Helix 39
AE3
D
212 225Right-handed alpha
Helix 40
AE4
E
64 81Right-handed alpha
Helix 41
AE5
E
86 88Right-handed 310
Helix 42
AE6
E
89 94Right-handed alpha
Helix 43
AE7
E
99 122Right-handed alpha
Helix 44
AE8
E
128 132Right-handed 310
Helix 45
AE9
E
134 138Right-handed 310
Helix 46
AF1
E
146 165Right-handed alpha
Helix 47
AF2
E
166 168Right-handed 310
Helix 48
AF3
E
180 184Right-handed 310
Helix 49
AF4
E
212 225Right-handed alpha
Helix 50
AF5
F
65 81Right-handed alpha
Helix 51
AF6
F
83 85Right-handed 310
Helix 52
AF7
F
86 94Right-handed alpha
Helix 53
AF8
F
99 121Right-handed alpha
Helix 54
AF9
F
128 132Right-handed 310
Helix 55
AG1
F
134 138Right-handed 310
Helix 56
AG2
F
146 165Right-handed alpha
Helix 57
AG3
F
212 225Right-handed alpha
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There are 6 sheets in PDB entry 6LAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
171 176parallel
Strand 3
A
200 211anti-parallel
Strand 4
A
295 306anti-parallel
Strand 5
A
230 240anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
171 176parallel
Strand 3
B
200 211anti-parallel
Strand 4
B
295 306anti-parallel
Strand 5
B
230 239anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
C
171 176parallel
Strand 3
C
200 211anti-parallel
Strand 4
C
295 306anti-parallel
Strand 5
C
230 239anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 125first strand
Strand 2
D
171 176parallel
Strand 3
D
200 211anti-parallel
Strand 4
D
295 306anti-parallel
Strand 5
D
230 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 125first strand
Strand 2
E
171 176parallel
Strand 3
E
200 211anti-parallel
Strand 4
E
295 306anti-parallel
Strand 5
E
230 239anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
124 125first strand
Strand 2
F
171 176parallel
Strand 3
F
200 211anti-parallel
Strand 4
F
295 306anti-parallel
Strand 5
F
230 238anti-parallel
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