Analysis of interatomic Contacts of Structural Units in PDB entry:
6LAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LAF entry

There are 2 chains in PDB entry 6LAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 81GLN 308
B
 SER 81LYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6LAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 86Right-handed alpha
Helix 2
AA2
A
86 91Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
99 121Right-handed alpha
Helix 5
AA5
A
126 131Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
146 166Right-handed alpha
Helix 8
AA8
A
212 226Right-handed alpha
Helix 9
AA9
B
82 86Right-handed alpha
Helix 10
AB1
B
86 93Right-handed alpha
Helix 11
AB2
B
99 121Right-handed alpha
Helix 12
AB3
B
126 131Right-handed alpha
Helix 13
AB4
B
134 138Right-handed 310
Helix 14
AB5
B
146 166Right-handed alpha
Helix 15
AB6
B
212 226Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6LAF.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
171 176parallel
Strand 3
A
201 211anti-parallel
Strand 4
A
295 305anti-parallel
Strand 5
A
231 239anti-parallel
Strand 6
B
231 239anti-parallel
Strand 7
B
295 306anti-parallel
Strand 8
B
200 211anti-parallel
Strand 9
B
171 176anti-parallel
Strand 10
B
124 125parallel
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