Analysis of interatomic Contacts of Structural Units in PDB entry:
6LAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LAR entry

There are 10 chains in PDB entry 6LAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	SER 89
B	PRO 8	LEU 471
C	PRO 8	VAL 472
F	SER 2	ASP 401
G	MET 1	LEU 285
E	PRO 8	LEU 471
H	PRO 8	VAL 472
I	VAL 33	PHE 91
J	SER 2	SER 402
D	MET 1	LEU 285

There are120 helices in PDB entry 6LAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	49	Right-handed alpha
Helix 2	AA2	A	62	87	Right-handed alpha
Helix 3	AA3	B	34	47	Right-handed alpha
Helix 4	AA4	B	82	87	Right-handed alpha
Helix 5	AA5	B	111	118	Right-handed alpha
Helix 6	AA6	B	127	129	Right-handed 310
Helix 7	AA7	B	130	158	Right-handed alpha
Helix 8	AA8	B	161	181	Right-handed alpha
Helix 9	AA9	B	187	196	Right-handed alpha
Helix 10	AB1	B	196	207	Right-handed alpha
Helix 11	AB2	B	215	235	Right-handed alpha
Helix 12	AB3	B	240	263	Right-handed alpha
Helix 13	AB4	B	269	285	Right-handed alpha
Helix 14	AB5	B	285	291	Right-handed alpha
Helix 15	AB6	B	292	294	Right-handed 310
Helix 16	AB7	B	319	350	Right-handed alpha
Helix 17	AB8	B	356	372	Right-handed alpha
Helix 18	AB9	B	380	404	Right-handed alpha
Helix 19	AC1	B	409	430	Right-handed alpha
Helix 20	AC2	B	440	455	Right-handed alpha
Helix 21	AC3	B	457	466	Right-handed alpha
Helix 22	AC4	C	37	46	Right-handed alpha
Helix 23	AC5	C	114	124	Right-handed alpha
Helix 24	AC6	C	129	158	Right-handed alpha
Helix 25	AC7	C	161	181	Right-handed alpha
Helix 26	AC8	C	187	196	Right-handed alpha
Helix 27	AC9	C	196	207	Right-handed alpha
Helix 28	AD1	C	216	234	Right-handed alpha
Helix 29	AD2	C	241	264	Right-handed alpha
Helix 30	AD3	C	269	285	Right-handed alpha
Helix 31	AD4	C	286	295	Right-handed alpha
Helix 32	AD5	C	313	319	Right-handed alpha
Helix 33	AD6	C	319	345	Right-handed alpha
Helix 34	AD7	C	345	351	Right-handed alpha
Helix 35	AD8	C	356	374	Right-handed alpha
Helix 36	AD9	C	379	404	Right-handed alpha
Helix 37	AE1	C	409	429	Right-handed alpha
Helix 38	AE2	C	435	439	Right-handed 310
Helix 39	AE3	C	440	467	Right-handed alpha
Helix 40	AE4	C	467	472	Right-handed alpha
Helix 41	AE5	F	37	41	Right-handed 310
Helix 42	AE6	F	93	130	Right-handed alpha
Helix 43	AE7	F	134	138	Right-handed 310
Helix 44	AE8	F	183	194	Right-handed alpha
Helix 45	AE9	F	220	239	Right-handed alpha
Helix 46	AF1	F	257	262	Right-handed 310
Helix 47	AF2	F	285	294	Right-handed alpha
Helix 48	AF3	F	386	398	Right-handed alpha
Helix 49	AF4	G	2	17	Right-handed alpha
Helix 50	AF5	G	27	41	Right-handed alpha
Helix 51	AF6	G	49	62	Right-handed alpha
Helix 52	AF7	G	86	89	Right-handed 310
Helix 53	AF8	G	90	95	Right-handed alpha
Helix 54	AF9	G	96	98	Right-handed 310
Helix 55	AG1	G	131	139	Right-handed alpha
Helix 56	AG2	G	143	163	Right-handed alpha
Helix 57	AG3	G	206	212	Right-handed alpha
Helix 58	AG4	G	265	269	Right-handed alpha
Helix 59	AG5	E	34	46	Right-handed alpha
Helix 60	AG6	E	113	118	Right-handed alpha
Helix 61	AG7	E	119	121	Right-handed 310
Helix 62	AG8	E	127	131	Right-handed 310
Helix 63	AG9	E	132	157	Right-handed alpha
Helix 64	AH1	E	161	181	Right-handed alpha
Helix 65	AH2	E	187	205	Right-handed alpha
Helix 66	AH3	E	215	233	Right-handed alpha
Helix 67	AH4	E	240	263	Right-handed alpha
Helix 68	AH5	E	269	285	Right-handed alpha
Helix 69	AH6	E	286	293	Right-handed alpha
Helix 70	AH7	E	294	294	Right-handed 310
Helix 71	AH8	E	316	318	Right-handed 310
Helix 72	AH9	E	319	350	Right-handed alpha
Helix 73	AI1	E	356	372	Right-handed alpha
Helix 74	AI2	E	373	377	Right-handed 310
Helix 75	AI3	E	379	388	Right-handed alpha
Helix 76	AI4	E	388	404	Right-handed alpha
Helix 77	AI5	E	408	430	Right-handed alpha
Helix 78	AI6	E	440	453	Right-handed alpha
Helix 79	AI7	E	458	466	Right-handed alpha
Helix 80	AI8	H	34	37	Right-handed 310
Helix 81	AI9	H	38	47	Right-handed alpha
Helix 82	AJ1	H	82	87	Right-handed alpha
Helix 83	AJ2	H	115	124	Right-handed alpha
Helix 84	AJ3	H	129	156	Right-handed alpha
Helix 85	AJ4	H	161	181	Right-handed alpha
Helix 86	AJ5	H	186	196	Right-handed alpha
Helix 87	AJ6	H	196	208	Right-handed alpha
Helix 88	AJ7	H	215	234	Right-handed alpha
Helix 89	AJ8	H	241	264	Right-handed alpha
Helix 90	AJ9	H	270	285	Right-handed alpha
Helix 91	AK1	H	289	294	Right-handed alpha
Helix 92	AK2	H	316	318	Right-handed 310
Helix 93	AK3	H	319	351	Right-handed alpha
Helix 94	AK4	H	356	370	Right-handed alpha
Helix 95	AK5	H	379	403	Right-handed alpha
Helix 96	AK6	H	408	429	Right-handed alpha
Helix 97	AK7	H	442	457	Right-handed alpha
Helix 98	AK8	H	457	467	Right-handed alpha
Helix 99	AK9	H	468	471	Right-handed 310
Helix 100	AL1	I	34	55	Right-handed alpha
Helix 101	AL2	I	62	87	Right-handed alpha
Helix 102	AL3	J	93	113	Right-handed alpha
Helix 103	AL4	J	114	129	Right-handed alpha
Helix 104	AL5	J	134	138	Right-handed 310
Helix 105	AL6	J	183	197	Right-handed alpha
Helix 106	AL7	J	208	212	Right-handed 310
Helix 107	AL8	J	220	238	Right-handed alpha
Helix 108	AL9	J	257	263	Right-handed 310
Helix 109	AM1	J	285	292	Right-handed alpha
Helix 110	AM2	J	386	398	Right-handed alpha
Helix 111	AM3	D	2	17	Right-handed alpha
Helix 112	AM4	D	27	41	Right-handed alpha
Helix 113	AM5	D	49	62	Right-handed alpha
Helix 114	AM6	D	86	89	Right-handed 310
Helix 115	AM7	D	90	95	Right-handed alpha
Helix 116	AM8	D	96	98	Right-handed 310
Helix 117	AM9	D	131	139	Right-handed alpha
Helix 118	AN1	D	143	163	Right-handed alpha
Helix 119	AN2	D	206	212	Right-handed alpha
Helix 120	AN3	D	265	269	Right-handed alpha

There are 17 sheets in PDB entry 6LAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	9	16	parallel
Strand 4	B	22	30	anti-parallel
Strand 5	C	110	112	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	30	first strand
Strand 2	C	9	14	anti-parallel
Strand 3	C	93	94	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	97	98	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	172	173	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	207	208	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	204	first strand
Strand 2	F	161	164	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	247	first strand
Strand 2	F	313	318	parallel
Strand 3	F	338	341	parallel
Strand 4	F	214	218	parallel
Strand 5	F	359	362	parallel
Strand 6	F	367	369	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	169	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	119	126	anti-parallel
Strand 4	G	106	112	anti-parallel
Strand 5	G	220	227	anti-parallel
Strand 6	G	234	241	anti-parallel
Strand 7	G	195	198	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	16	first strand
Strand 2	E	22	30	anti-parallel
Strand 3	H	110	112	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	94	98	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	13	15	anti-parallel
Strand 3	H	93	95	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	97	98	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	400	401	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	158	165	first strand
Strand 2	J	200	207	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	342	343	first strand
Strand 2	J	217	218	parallel
Strand 3	J	360	362	parallel
Strand 4	J	367	369	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	249	first strand
Strand 2	J	313	318	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	76	82	anti-parallel
Strand 3	D	119	126	anti-parallel
Strand 4	D	106	112	anti-parallel
Strand 5	D	220	227	anti-parallel
Strand 6	D	234	241	anti-parallel
Strand 7	D	195	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LAR