Analysis of interatomic Contacts of Structural Units in PDB entry:
6LAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LAT entry

There is 1 chain in PDB entry 6LAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 129SER 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6LAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 179Right-handed alpha
Helix 2
AA2
A
247 252Right-handed alpha
Helix 3
AA3
A
254 256Right-handed 310
Helix 4
AA4
A
347 351Right-handed 310
Helix 5
AA5
A
378 382Right-handed 310
Helix 6
AA6
A
415 422Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6LAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
298 308anti-parallel
Strand 3
A
184 196anti-parallel
Strand 4
A
244 245anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
298 308anti-parallel
Strand 3
A
184 196anti-parallel
Strand 4
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 159first strand
Strand 2
A
275 281anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 327first strand
Strand 2
A
436 442anti-parallel
Strand 3
A
369 373anti-parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
409 413anti-parallel
Strand 6
A
339 342anti-parallel
Strand 7
A
330 333anti-parallel
Strand 8
A
431 432anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
520 521parallel
Strand 3
A
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
499 502anti-parallel
Strand 3
A
470 474anti-parallel
Strand 4
A
595 600anti-parallel
Strand 5
A
546 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 530first strand
Strand 2
A
535 540anti-parallel
Strand 3
A
568 571anti-parallel
Strand 4
A
579 580anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il