Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LB0 entry

There is 1 chain in PDB entry 6LB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 129PRO 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6LB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 179Right-handed alpha
Helix 2
AA2
A
254 258Right-handed 310
Helix 3
AA3
A
347 351Right-handed 310
Helix 4
AA4
A
384 388Right-handed 310
Helix 5
AA5
A
415 421Right-handed alpha
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There are 4 sheets in PDB entry 6LB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
298 308anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
244 245anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 139first strand
Strand 2
A
298 308anti-parallel
Strand 3
A
184 189anti-parallel
Strand 4
A
259 260anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 159first strand
Strand 2
A
275 281anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
233 236anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 327first strand
Strand 2
A
436 442anti-parallel
Strand 3
A
369 372anti-parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
409 413anti-parallel
Strand 6
A
339 342anti-parallel
Strand 7
A
331 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il