Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LB7 entry

There are 4 chains in PDB entry 6LB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 110	ARG 440
B	LEU 85	ARG 397
C	SER 104	SER 446
D	SER 82	TRP 400

There are 68 helices in PDB entry 6LB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	122	Right-handed alpha
Helix 2	AA2	A	123	132	Right-handed alpha
Helix 3	AA3	A	148	156	Right-handed alpha
Helix 4	AA4	A	193	199	Right-handed 310
Helix 5	AA5	A	205	218	Right-handed alpha
Helix 6	AA6	A	219	231	Right-handed alpha
Helix 7	AA7	A	239	254	Right-handed alpha
Helix 8	AA8	A	277	284	Right-handed alpha
Helix 9	AA9	A	293	315	Right-handed alpha
Helix 10	AB1	A	323	336	Right-handed alpha
Helix 11	AB2	A	339	353	Right-handed alpha
Helix 12	AB3	A	361	373	Right-handed alpha
Helix 13	AB4	A	373	381	Right-handed alpha
Helix 14	AB5	A	381	387	Right-handed alpha
Helix 15	AB6	A	392	404	Right-handed alpha
Helix 16	AB7	A	409	421	Right-handed alpha
Helix 17	AB8	A	433	439	Right-handed alpha
Helix 18	AB9	B	86	94	Right-handed alpha
Helix 19	AC1	B	105	115	Right-handed alpha
Helix 20	AC2	B	128	137	Right-handed alpha
Helix 21	AC3	B	147	153	Right-handed alpha
Helix 22	AC4	B	159	171	Right-handed alpha
Helix 23	AC5	B	172	174	Right-handed 310
Helix 24	AC6	B	175	185	Right-handed alpha
Helix 25	AC7	B	193	206	Right-handed alpha
Helix 26	AC8	B	232	240	Right-handed alpha
Helix 27	AC9	B	249	273	Right-handed alpha
Helix 28	AD1	B	279	288	Right-handed alpha
Helix 29	AD2	B	295	307	Right-handed alpha
Helix 30	AD3	B	314	326	Right-handed alpha
Helix 31	AD4	B	327	341	Right-handed alpha
Helix 32	AD5	B	346	359	Right-handed alpha
Helix 33	AD6	B	363	375	Right-handed alpha
Helix 34	AD7	B	383	397	Right-handed alpha
Helix 35	AD8	C	105	122	Right-handed alpha
Helix 36	AD9	C	123	132	Right-handed alpha
Helix 37	AE1	C	148	157	Right-handed alpha
Helix 38	AE2	C	163	167	Right-handed 310
Helix 39	AE3	C	193	197	Right-handed 310
Helix 40	AE4	C	205	218	Right-handed alpha
Helix 41	AE5	C	219	231	Right-handed alpha
Helix 42	AE6	C	239	253	Right-handed alpha
Helix 43	AE7	C	275	284	Right-handed alpha
Helix 44	AE8	C	293	314	Right-handed alpha
Helix 45	AE9	C	323	333	Right-handed alpha
Helix 46	AF1	C	338	349	Right-handed alpha
Helix 47	AF2	C	361	372	Right-handed alpha
Helix 48	AF3	C	373	387	Right-handed alpha
Helix 49	AF4	C	392	404	Right-handed alpha
Helix 50	AF5	C	409	421	Right-handed alpha
Helix 51	AF6	C	429	443	Right-handed alpha
Helix 52	AF7	D	85	94	Right-handed alpha
Helix 53	AF8	D	105	115	Right-handed alpha
Helix 54	AF9	D	128	136	Right-handed alpha
Helix 55	AG1	D	147	153	Right-handed alpha
Helix 56	AG2	D	159	172	Right-handed alpha
Helix 57	AG3	D	176	185	Right-handed alpha
Helix 58	AG4	D	193	195	Right-handed 310
Helix 59	AG5	D	196	206	Right-handed alpha
Helix 60	AG6	D	232	240	Right-handed alpha
Helix 61	AG7	D	249	273	Right-handed alpha
Helix 62	AG8	D	279	288	Right-handed alpha
Helix 63	AG9	D	295	307	Right-handed alpha
Helix 64	AH1	D	314	325	Right-handed alpha
Helix 65	AH2	D	327	341	Right-handed alpha
Helix 66	AH3	D	346	359	Right-handed alpha
Helix 67	AH4	D	363	375	Right-handed alpha
Helix 68	AH5	D	383	397	Right-handed alpha

There are 10 sheets in PDB entry 6LB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	172	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	291	292	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	96	98	anti-parallel
Strand 3	B	125	126	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	172	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	291	292	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	96	98	anti-parallel
Strand 3	D	125	126	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	247	248	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB7