Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LB8 entry

There are 4 chains in PDB entry 6LB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1001	SER 446
B	SER 84	VAL 401
C	MET 1001	SER 446
D	GLY 83	LEU 399

There are 87 helices in PDB entry 6LB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1002	1011	Right-handed alpha
Helix 2	AA2	A	1038	1047	Right-handed alpha
Helix 3	AA3	A	1064	1080	Right-handed alpha
Helix 4	AA4	A	1083	1091	Right-handed alpha
Helix 5	AA5	A	1092	1112	Right-handed alpha
Helix 6	AA6	A	1114	1123	Right-handed alpha
Helix 7	AA7	A	1125	1134	Right-handed alpha
Helix 8	AA8	A	1136	1142	Right-handed alpha
Helix 9	AA9	A	1142	1156	Right-handed alpha
Helix 10	AB1	A	1158	99	Right-handed alpha
Helix 11	AB2	A	105	122	Right-handed alpha
Helix 12	AB3	A	123	132	Right-handed alpha
Helix 13	AB4	A	148	157	Right-handed alpha
Helix 14	AB5	A	193	203	Right-handed 310
Helix 15	AB6	A	205	217	Right-handed alpha
Helix 16	AB7	A	219	231	Right-handed alpha
Helix 17	AB8	A	240	253	Right-handed alpha
Helix 18	AB9	A	275	284	Right-handed alpha
Helix 19	AC1	A	293	314	Right-handed alpha
Helix 20	AC2	A	317	319	Right-handed 310
Helix 21	AC3	A	323	332	Right-handed alpha
Helix 22	AC4	A	338	344	Right-handed alpha
Helix 23	AC5	A	361	372	Right-handed alpha
Helix 24	AC6	A	373	387	Right-handed alpha
Helix 25	AC7	A	392	403	Right-handed alpha
Helix 26	AC8	A	409	421	Right-handed alpha
Helix 27	AC9	A	429	443	Right-handed alpha
Helix 28	AD1	B	85	94	Right-handed alpha
Helix 29	AD2	B	105	115	Right-handed alpha
Helix 30	AD3	B	128	142	Right-handed alpha
Helix 31	AD4	B	147	153	Right-handed alpha
Helix 32	AD5	B	159	172	Right-handed alpha
Helix 33	AD6	B	176	184	Right-handed alpha
Helix 34	AD7	B	196	206	Right-handed alpha
Helix 35	AD8	B	232	240	Right-handed alpha
Helix 36	AD9	B	249	272	Right-handed alpha
Helix 37	AE1	B	279	288	Right-handed alpha
Helix 38	AE2	B	295	305	Right-handed alpha
Helix 39	AE3	B	314	327	Right-handed alpha
Helix 40	AE4	B	327	340	Right-handed alpha
Helix 41	AE5	B	346	359	Right-handed alpha
Helix 42	AE6	B	363	375	Right-handed alpha
Helix 43	AE7	B	383	397	Right-handed alpha
Helix 44	AE8	C	1002	1012	Right-handed alpha
Helix 45	AE9	C	1038	1051	Right-handed alpha
Helix 46	AF1	C	1059	1081	Right-handed alpha
Helix 47	AF2	C	1083	1091	Right-handed alpha
Helix 48	AF3	C	1092	1107	Right-handed alpha
Helix 49	AF4	C	1107	1113	Right-handed alpha
Helix 50	AF5	C	1114	1123	Right-handed alpha
Helix 51	AF6	C	1125	1134	Right-handed alpha
Helix 52	AF7	C	1136	1142	Right-handed alpha
Helix 53	AF8	C	1142	1156	Right-handed alpha
Helix 54	AF9	C	1158	103	Right-handed alpha
Helix 55	AG1	C	105	122	Right-handed alpha
Helix 56	AG2	C	123	132	Right-handed alpha
Helix 57	AG3	C	148	157	Right-handed alpha
Helix 58	AG4	C	193	197	Right-handed 310
Helix 59	AG5	C	205	216	Right-handed alpha
Helix 60	AG6	C	219	230	Right-handed alpha
Helix 61	AG7	C	239	252	Right-handed alpha
Helix 62	AG8	C	275	284	Right-handed alpha
Helix 63	AG9	C	293	315	Right-handed alpha
Helix 64	AH1	C	323	333	Right-handed alpha
Helix 65	AH2	C	338	343	Right-handed alpha
Helix 66	AH3	C	361	372	Right-handed alpha
Helix 67	AH4	C	373	387	Right-handed alpha
Helix 68	AH5	C	392	404	Right-handed alpha
Helix 69	AH6	C	409	420	Right-handed alpha
Helix 70	AH7	C	429	443	Right-handed alpha
Helix 71	AH8	D	84	94	Right-handed alpha
Helix 72	AH9	D	105	115	Right-handed alpha
Helix 73	AI1	D	128	136	Right-handed alpha
Helix 74	AI2	D	138	142	Right-handed 310
Helix 75	AI3	D	147	153	Right-handed alpha
Helix 76	AI4	D	160	172	Right-handed alpha
Helix 77	AI5	D	176	185	Right-handed alpha
Helix 78	AI6	D	193	206	Right-handed alpha
Helix 79	AI7	D	232	240	Right-handed alpha
Helix 80	AI8	D	249	272	Right-handed alpha
Helix 81	AI9	D	280	288	Right-handed alpha
Helix 82	AJ1	D	295	307	Right-handed alpha
Helix 83	AJ2	D	314	327	Right-handed alpha
Helix 84	AJ3	D	327	341	Right-handed alpha
Helix 85	AJ4	D	346	359	Right-handed alpha
Helix 86	AJ5	D	363	375	Right-handed alpha
Helix 87	AJ6	D	383	397	Right-handed alpha

There are 13 sheets in PDB entry 6LB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1019	first strand
Strand 2	A	1025	1029	anti-parallel
Strand 3	A	1031	1032	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	134	137	anti-parallel
Strand 3	A	173	175	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	290	292	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	359	360	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	96	98	anti-parallel
Strand 3	B	125	126	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	246	248	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1019	first strand
Strand 2	C	1025	1028	anti-parallel
Strand 3	C	1031	1034	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	171	174	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	291	292	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	359	360	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	96	98	parallel
Strand 3	D	101	104	anti-parallel
Strand 4	D	158	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	247	248	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	312	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB8