Analysis of interatomic Contacts of Structural Units in PDB entry:
6LB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LB9 entry

There are 2 chains in PDB entry 6LB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ASP 352
B
 ASP 3LEU 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 6LB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed alpha
Helix 2
AA2
A
23 35Right-handed alpha
Helix 3
AA3
A
45 51Right-handed alpha
Helix 4
AA4
A
53 55Right-handed 310
Helix 5
AA5
A
56 67Right-handed alpha
Helix 6
AA6
A
88 96Right-handed alpha
Helix 7
AA7
A
106 119Right-handed alpha
Helix 8
AA8
A
128 137Right-handed alpha
Helix 9
AA9
A
144 160Right-handed alpha
Helix 10
AB1
A
165 181Right-handed alpha
Helix 11
AB2
A
182 186Right-handed 310
Helix 12
AB3
A
200 206Right-handed 310
Helix 13
AB4
A
230 244Right-handed alpha
Helix 14
AB5
A
254 260Right-handed alpha
Helix 15
AB6
A
263 269Right-handed alpha
Helix 16
AB7
A
271 284Right-handed alpha
Helix 17
AB8
A
305 318Right-handed alpha
Helix 18
AB9
A
319 324Right-handed 310
Helix 19
AC1
A
329 337Right-handed alpha
Helix 20
AC2
A
338 349Right-handed alpha
Helix 21
AC3
B
4 10Right-handed alpha
Helix 22
AC4
B
23 37Right-handed alpha
Helix 23
AC5
B
45 51Right-handed alpha
Helix 24
AC6
B
53 67Right-handed alpha
Helix 25
AC7
B
88 96Right-handed alpha
Helix 26
AC8
B
106 119Right-handed alpha
Helix 27
AC9
B
128 137Right-handed alpha
Helix 28
AD1
B
145 160Right-handed alpha
Helix 29
AD2
B
165 181Right-handed alpha
Helix 30
AD3
B
182 186Right-handed 310
Helix 31
AD4
B
200 206Right-handed 310
Helix 32
AD5
B
230 243Right-handed alpha
Helix 33
AD6
B
254 260Right-handed alpha
Helix 34
AD7
B
263 269Right-handed alpha
Helix 35
AD8
B
271 284Right-handed alpha
Helix 36
AD9
B
305 318Right-handed alpha
Helix 37
AE1
B
319 324Right-handed 310
Helix 38
AE2
B
329 337Right-handed alpha
Helix 39
AE3
B
338 349Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6LB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
83 87anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
218 221anti-parallel
Strand 3
A
208 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
218 221anti-parallel
Strand 3
B
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
298 302anti-parallel
Strand 3
B
289 293anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il