Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LBE entry

There are 6 chains in PDB entry 6LBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 274
B	ARG 1	MET 98
C	GLY 1	ASN 273
D	ARG 1	MET 98
E	PHE 1	ILE 9
F	PHE 1	ILE 9

There are 15 helices in PDB entry 6LBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	53	Right-handed alpha
Helix 2	AA2	A	54	83	Right-handed alpha
Helix 3	AA3	A	133	145	Right-handed alpha
Helix 4	AA4	A	147	158	Right-handed alpha
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	171	176	Right-handed alpha
Helix 7	AA7	A	243	249	Right-handed alpha
Helix 8	AA8	A	266	270	Right-handed 310
Helix 9	AA9	C	46	51	Right-handed alpha
Helix 10	AB1	C	54	83	Right-handed alpha
Helix 11	AB2	C	133	145	Right-handed alpha
Helix 12	AB3	C	147	158	Right-handed alpha
Helix 13	AB4	C	158	171	Right-handed alpha
Helix 14	AB5	C	171	176	Right-handed alpha
Helix 15	AB6	D	58	60	Right-handed 310

There are 14 sheets in PDB entry 6LBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	21	27	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	91	100	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	234	240	anti-parallel
Strand 4	A	221	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	234	240	anti-parallel
Strand 4	A	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	252	258	anti-parallel
Strand 4	A	261	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	35	41	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	90	93	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	21	27	anti-parallel
Strand 4	C	3	13	anti-parallel
Strand 5	C	90	100	anti-parallel
Strand 6	C	106	114	anti-parallel
Strand 7	C	117	123	anti-parallel
Strand 8	C	128	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	234	240	anti-parallel
Strand 3	C	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	234	240	anti-parallel
Strand 3	C	194	201	anti-parallel
Strand 4	C	182	186	anti-parallel
Strand 5	C	270	271	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	252	258	anti-parallel
Strand 4	C	261	266	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	90	93	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBE