Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LBF entry

There are 2 chains in PDB entry 6LBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 356
B
 GLU 2ASP 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6LBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
16 25Right-handed alpha
Helix 3
AA3
A
28 38Right-handed alpha
Helix 4
AA4
A
48 56Right-handed alpha
Helix 5
AA5
A
58 69Right-handed alpha
Helix 6
AA6
A
91 99Right-handed alpha
Helix 7
AA7
A
100 110Right-handed alpha
Helix 8
AA8
A
123 132Right-handed alpha
Helix 9
AA9
A
133 143Right-handed alpha
Helix 10
AB1
A
156 165Right-handed alpha
Helix 11
AB2
A
166 176Right-handed alpha
Helix 12
AB3
A
189 198Right-handed alpha
Helix 13
AB4
A
199 209Right-handed alpha
Helix 14
AB5
A
221 229Right-handed alpha
Helix 15
AB6
A
231 240Right-handed alpha
Helix 16
AB7
A
246 260Right-handed alpha
Helix 17
AB8
A
268 284Right-handed alpha
Helix 18
AB9
A
310 316Right-handed alpha
Helix 19
AC1
A
320 336Right-handed alpha
Helix 20
AC2
B
3 15Right-handed alpha
Helix 21
AC3
B
16 24Right-handed alpha
Helix 22
AC4
B
28 38Right-handed alpha
Helix 23
AC5
B
48 56Right-handed alpha
Helix 24
AC6
B
58 70Right-handed alpha
Helix 25
AC7
B
91 98Right-handed alpha
Helix 26
AC8
B
100 110Right-handed alpha
Helix 27
AC9
B
123 132Right-handed alpha
Helix 28
AD1
B
133 143Right-handed alpha
Helix 29
AD2
B
156 165Right-handed alpha
Helix 30
AD3
B
166 175Right-handed alpha
Helix 31
AD4
B
189 198Right-handed alpha
Helix 32
AD5
B
199 209Right-handed alpha
Helix 33
AD6
B
221 229Right-handed alpha
Helix 34
AD7
B
231 240Right-handed alpha
Helix 35
AD8
B
245 260Right-handed alpha
Helix 36
AD9
B
269 285Right-handed alpha
Helix 37
AE1
B
310 316Right-handed alpha
Helix 38
AE2
B
320 336Right-handed alpha
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There are 4 sheets in PDB entry 6LBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
46 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
84 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
46 47anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
85 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il