Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LBI entry

There are 12 chains in PDB entry 6LBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 A 1 T 20
B
 A 1 T 20
C
 ALA 159GLU 242
D
 TRP 160GLY 243
E
 A 1 T 20
F
 A 1 T 20
G
 ASN 158ASN 240
H
 ASN 158ASN 240
I
 A 1 T 20
J
 A 1 T 20
K
 ASN 158PRO 241
L
 ARG 156ASN 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6LBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
164 175Right-handed alpha
Helix 2
AA2
C
182 194Right-handed alpha
Helix 3
AA3
C
195 198Right-handed 310
Helix 4
AA4
C
206 220Right-handed alpha
Helix 5
AA5
D
164 176Right-handed alpha
Helix 6
AA6
D
182 194Right-handed alpha
Helix 7
AA7
D
195 198Right-handed 310
Helix 8
AA8
D
208 220Right-handed alpha
Helix 9
AA9
G
164 176Right-handed alpha
Helix 10
AB1
G
182 194Right-handed alpha
Helix 11
AB2
G
194 199Right-handed alpha
Helix 12
AB3
G
206 220Right-handed alpha
Helix 13
AB4
H
165 176Right-handed alpha
Helix 14
AB5
H
182 194Right-handed alpha
Helix 15
AB6
H
195 198Right-handed 310
Helix 16
AB7
H
208 220Right-handed alpha
Helix 17
AB8
K
164 176Right-handed alpha
Helix 18
AB9
K
182 194Right-handed alpha
Helix 19
AC1
K
195 198Right-handed 310
Helix 20
AC2
K
207 220Right-handed alpha
Helix 21
AC3
L
164 176Right-handed alpha
Helix 22
AC4
L
183 194Right-handed alpha
Helix 23
AC5
L
195 198Right-handed 310
Helix 24
AC6
L
207 220Right-handed alpha
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There are 5 sheets in PDB entry 6LBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 226first strand
Strand 2
C
236 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 226first strand
Strand 2
D
236 239anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
223 226first strand
Strand 2
G
236 239anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
180 181first strand
Strand 2
K
236 239anti-parallel
Strand 3
K
223 226anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
181 182first strand
Strand 2
L
236 239anti-parallel
Strand 3
L
223 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il