Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LBJ entry

There are 2 chains in PDB entry 6LBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 146ALA 480
B
 ARG 145THR 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6LBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 168Right-handed alpha
Helix 2
AA2
A
170 192Right-handed alpha
Helix 3
AA3
A
201 206Right-handed alpha
Helix 4
AA4
A
234 249Right-handed alpha
Helix 5
AA5
A
285 301Right-handed alpha
Helix 6
AA6
A
303 318Right-handed alpha
Helix 7
AA7
A
329 343Right-handed alpha
Helix 8
AA8
A
351 356Right-handed alpha
Helix 9
AA9
A
365 370Right-handed alpha
Helix 10
AB1
A
386 400Right-handed alpha
Helix 11
AB2
A
422 427Right-handed alpha
Helix 12
AB3
A
447 468Right-handed alpha
Helix 13
AB4
A
470 474Right-handed 310
Helix 14
AB5
B
154 168Right-handed alpha
Helix 15
AB6
B
170 192Right-handed alpha
Helix 16
AB7
B
201 206Right-handed alpha
Helix 17
AB8
B
232 249Right-handed alpha
Helix 18
AB9
B
284 301Right-handed alpha
Helix 19
AC1
B
303 318Right-handed alpha
Helix 20
AC2
B
329 343Right-handed alpha
Helix 21
AC3
B
351 356Right-handed alpha
Helix 22
AC4
B
368 370Right-handed 310
Helix 23
AC5
B
371 376Right-handed alpha
Helix 24
AC6
B
386 401Right-handed alpha
Helix 25
AC7
B
422 428Right-handed alpha
Helix 26
AC8
B
447 469Right-handed alpha
Helix 27
AC9
B
470 475Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6LBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
276 282parallel
Strand 4
A
266 271anti-parallel
Strand 5
A
254 260anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 418first strand
Strand 2
A
407 410anti-parallel
Strand 3
A
432 433parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
214 219anti-parallel
Strand 3
B
276 282parallel
Strand 4
B
266 271anti-parallel
Strand 5
B
254 260anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 418first strand
Strand 2
B
407 410anti-parallel
Strand 3
B
432 433parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il