Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LBK entry

There are 2 chains in PDB entry 6LBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 148THR 481
B
 ILE 147LEU 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6LBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 168Right-handed alpha
Helix 2
AA2
A
170 190Right-handed alpha
Helix 3
AA3
A
201 204Right-handed 310
Helix 4
AA4
A
232 249Right-handed alpha
Helix 5
AA5
A
285 299Right-handed alpha
Helix 6
AA6
A
303 318Right-handed alpha
Helix 7
AA7
A
322 326Right-handed 310
Helix 8
AA8
A
329 344Right-handed alpha
Helix 9
AA9
A
351 356Right-handed alpha
Helix 10
AB1
A
356 361Right-handed alpha
Helix 11
AB2
A
365 370Right-handed 310
Helix 12
AB3
A
371 376Right-handed alpha
Helix 13
AB4
A
386 401Right-handed alpha
Helix 14
AB5
A
422 426Right-handed 310
Helix 15
AB6
A
447 468Right-handed alpha
Helix 16
AB7
A
470 474Right-handed 310
Helix 17
AB8
B
154 168Right-handed alpha
Helix 18
AB9
B
170 190Right-handed alpha
Helix 19
AC1
B
201 204Right-handed 310
Helix 20
AC2
B
235 249Right-handed alpha
Helix 21
AC3
B
285 299Right-handed alpha
Helix 22
AC4
B
303 318Right-handed alpha
Helix 23
AC5
B
322 326Right-handed 310
Helix 24
AC6
B
329 344Right-handed alpha
Helix 25
AC7
B
351 356Right-handed alpha
Helix 26
AC8
B
356 361Right-handed alpha
Helix 27
AC9
B
365 370Right-handed 310
Helix 28
AD1
B
371 376Right-handed alpha
Helix 29
AD2
B
386 401Right-handed alpha
Helix 30
AD3
B
447 469Right-handed alpha
Helix 31
AD4
B
470 474Right-handed 310
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There are 4 sheets in PDB entry 6LBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 200first strand
Strand 2
A
214 220anti-parallel
Strand 3
A
276 282parallel
Strand 4
A
266 271anti-parallel
Strand 5
A
254 260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 418first strand
Strand 2
A
407 410anti-parallel
Strand 3
A
432 433parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 200first strand
Strand 2
B
214 220anti-parallel
Strand 3
B
276 282parallel
Strand 4
B
266 271anti-parallel
Strand 5
B
254 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 410first strand
Strand 2
B
415 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il