Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LBP entry

There are 2 chains in PDB entry 6LBP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 87	ASP 546
B	CYS 87	ASP 546

There are 42 helices in PDB entry 6LBP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	109	Right-handed alpha
Helix 2	AA2	A	110	113	Right-handed 310
Helix 3	AA3	A	136	141	Right-handed alpha
Helix 4	AA4	A	142	147	Right-handed alpha
Helix 5	AA5	A	163	167	Right-handed 310
Helix 6	AA6	A	193	203	Right-handed alpha
Helix 7	AA7	A	212	224	Right-handed alpha
Helix 8	AA8	A	228	238	Right-handed alpha
Helix 9	AA9	A	281	288	Right-handed alpha
Helix 10	AB1	A	324	329	Right-handed alpha
Helix 11	AB2	A	342	357	Right-handed alpha
Helix 12	AB3	A	371	383	Right-handed alpha
Helix 13	AB4	A	409	414	Right-handed alpha
Helix 14	AB5	A	419	424	Right-handed alpha
Helix 15	AB6	A	438	451	Right-handed alpha
Helix 16	AB7	A	477	480	Right-handed 310
Helix 17	AB8	A	481	486	Right-handed alpha
Helix 18	AB9	A	487	496	Right-handed alpha
Helix 19	AC1	A	504	513	Right-handed alpha
Helix 20	AC2	A	514	517	Right-handed 310
Helix 21	AC3	A	521	526	Right-handed alpha
Helix 22	AC4	B	97	109	Right-handed alpha
Helix 23	AC5	B	110	113	Right-handed 310
Helix 24	AC6	B	136	141	Right-handed alpha
Helix 25	AC7	B	142	147	Right-handed alpha
Helix 26	AC8	B	163	167	Right-handed 310
Helix 27	AC9	B	193	203	Right-handed alpha
Helix 28	AD1	B	212	224	Right-handed alpha
Helix 29	AD2	B	228	238	Right-handed alpha
Helix 30	AD3	B	281	288	Right-handed alpha
Helix 31	AD4	B	324	329	Right-handed alpha
Helix 32	AD5	B	342	357	Right-handed alpha
Helix 33	AD6	B	371	383	Right-handed alpha
Helix 34	AD7	B	409	414	Right-handed alpha
Helix 35	AD8	B	419	424	Right-handed alpha
Helix 36	AD9	B	438	451	Right-handed alpha
Helix 37	AE1	B	477	480	Right-handed 310
Helix 38	AE2	B	481	486	Right-handed alpha
Helix 39	AE3	B	487	496	Right-handed alpha
Helix 40	AE4	B	504	513	Right-handed alpha
Helix 41	AE5	B	514	517	Right-handed 310
Helix 42	AE6	B	521	526	Right-handed alpha

There are 12 sheets in PDB entry 6LBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	153	159	anti-parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	276	279	anti-parallel
Strand 6	A	267	270	anti-parallel
Strand 7	A	291	295	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	181	191	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	254	258	anti-parallel
Strand 5	A	300	304	anti-parallel
Strand 6	A	309	314	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	519	520	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	340	341	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	427	432	parallel
Strand 3	A	455	460	parallel
Strand 4	A	499	502	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	416	418	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	153	159	anti-parallel
Strand 4	B	88	93	anti-parallel
Strand 5	B	276	279	anti-parallel
Strand 6	B	267	270	anti-parallel
Strand 7	B	291	295	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	181	191	anti-parallel
Strand 3	B	242	250	anti-parallel
Strand 4	B	254	258	anti-parallel
Strand 5	B	300	304	anti-parallel
Strand 6	B	309	314	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	519	520	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	340	341	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	427	432	parallel
Strand 3	B	455	460	parallel
Strand 4	B	499	502	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	416	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LBP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBP