Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LBR entry

There are 4 chains in PDB entry 6LBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 369THR 897
B
 ARG 506ASP 717
C
 A 1 G 22
D
 A 1 T 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6LBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
379 383Right-handed 310
Helix 2
AA2
A
446 455Right-handed alpha
Helix 3
AA3
A
462 477Right-handed alpha
Helix 4
AA4
A
512 522Right-handed alpha
Helix 5
AA5
A
526 530Right-handed 310
Helix 6
AA6
A
596 611Right-handed alpha
Helix 7
AA7
A
614 618Right-handed 310
Helix 8
AA8
A
625 629Right-handed 310
Helix 9
AA9
A
662 680Right-handed alpha
Helix 10
AB1
A
681 688Right-handed alpha
Helix 11
AB2
A
688 693Right-handed alpha
Helix 12
AB3
A
729 740Right-handed alpha
Helix 13
AB4
A
741 747Right-handed alpha
Helix 14
AB5
A
766 774Right-handed alpha
Helix 15
AB6
A
815 820Right-handed alpha
Helix 16
AB7
A
827 836Right-handed alpha
Helix 17
AB8
A
843 848Right-handed alpha
Helix 18
AB9
A
849 851Right-handed 310
Helix 19
AC1
A
881 897Right-handed alpha
Helix 20
AC2
B
512 522Right-handed alpha
Helix 21
AC3
B
526 530Right-handed 310
Helix 22
AC4
B
585 587Right-handed 310
Helix 23
AC5
B
596 611Right-handed alpha
Helix 24
AC6
B
613 617Right-handed 310
Helix 25
AC7
B
625 629Right-handed 310
Helix 26
AC8
B
662 680Right-handed alpha
Helix 27
AC9
B
681 688Right-handed alpha
Helix 28
AD1
B
688 694Right-handed alpha
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There are 6 sheets in PDB entry 6LBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 812first strand
Strand 2
A
493 507parallel
Strand 3
A
478 490anti-parallel
Strand 4
A
389 400anti-parallel
Strand 5
A
417 422anti-parallel
Strand 6
A
440 444anti-parallel
Strand 7
A
493 507parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
870 877parallel
Strand 3
A
854 867anti-parallel
Strand 4
A
781 792anti-parallel
Strand 5
A
763 764parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
870 877parallel
Strand 3
A
854 867anti-parallel
Strand 4
A
781 792anti-parallel
Strand 5
A
796 803anti-parallel
Strand 6
A
821 826anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
555 561anti-parallel
Strand 3
A
593 595anti-parallel
Strand 4
A
644 654parallel
Strand 5
A
631 641anti-parallel
Strand 6
A
537 549anti-parallel
Strand 7
A
555 561anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 700first strand
Strand 2
A
707 709anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 590first strand
Strand 2
B
555 561anti-parallel
Strand 3
B
593 595anti-parallel
Strand 4
B
644 654parallel
Strand 5
B
631 641anti-parallel
Strand 6
B
537 549anti-parallel
Strand 7
B
555 561anti-parallel
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