Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LBS entry

There are 6 chains in PDB entry 6LBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 274	SER 432
B	LEU 274	LYS 433
C	LEU 274	THR 430
D	LYS 273	LYS 433
E	SER 275	LYS 433
F	LEU 274	LYS 433

There are 36 helices in PDB entry 6LBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	294	Right-handed alpha
Helix 2	AA2	A	299	307	Right-handed alpha
Helix 3	AA3	A	324	338	Right-handed alpha
Helix 4	AA4	A	350	371	Right-handed alpha
Helix 5	AA5	A	379	387	Right-handed alpha
Helix 6	AA6	A	392	407	Right-handed alpha
Helix 7	AA7	B	275	294	Right-handed alpha
Helix 8	AA8	B	299	305	Right-handed alpha
Helix 9	AA9	B	324	338	Right-handed alpha
Helix 10	AB1	B	350	370	Right-handed alpha
Helix 11	AB2	B	379	387	Right-handed alpha
Helix 12	AB3	B	392	405	Right-handed alpha
Helix 13	AB4	C	275	292	Right-handed alpha
Helix 14	AB5	C	300	309	Right-handed alpha
Helix 15	AB6	C	324	338	Right-handed alpha
Helix 16	AB7	C	350	369	Right-handed alpha
Helix 17	AB8	C	379	387	Right-handed alpha
Helix 18	AB9	C	392	407	Right-handed alpha
Helix 19	AC1	D	275	294	Right-handed alpha
Helix 20	AC2	D	299	309	Right-handed alpha
Helix 21	AC3	D	324	338	Right-handed alpha
Helix 22	AC4	D	350	370	Right-handed alpha
Helix 23	AC5	D	379	386	Right-handed alpha
Helix 24	AC6	D	392	407	Right-handed alpha
Helix 25	AC7	E	276	294	Right-handed alpha
Helix 26	AC8	E	299	309	Right-handed alpha
Helix 27	AC9	E	324	338	Right-handed alpha
Helix 28	AD1	E	350	369	Right-handed alpha
Helix 29	AD2	E	379	387	Right-handed alpha
Helix 30	AD3	E	392	407	Right-handed alpha
Helix 31	AD4	F	275	294	Right-handed alpha
Helix 32	AD5	F	299	308	Right-handed alpha
Helix 33	AD6	F	324	337	Right-handed alpha
Helix 34	AD7	F	350	371	Right-handed alpha
Helix 35	AD8	F	379	387	Right-handed alpha
Helix 36	AD9	F	392	407	Right-handed alpha

There are 12 sheets in PDB entry 6LBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	347	349	anti-parallel
Strand 3	A	342	343	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	424	431	anti-parallel
Strand 3	A	412	419	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	347	349	anti-parallel
Strand 3	B	342	343	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	378	first strand
Strand 2	B	424	431	anti-parallel
Strand 3	B	412	419	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	347	349	anti-parallel
Strand 3	C	342	343	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	424	430	anti-parallel
Strand 3	C	414	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	298	first strand
Strand 2	D	347	349	anti-parallel
Strand 3	D	342	343	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	378	first strand
Strand 2	D	424	431	anti-parallel
Strand 3	D	412	418	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	298	first strand
Strand 2	E	347	349	anti-parallel
Strand 3	E	342	343	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	424	431	anti-parallel
Strand 3	E	412	419	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	298	first strand
Strand 2	F	347	349	anti-parallel
Strand 3	F	342	343	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	378	first strand
Strand 2	F	424	431	anti-parallel
Strand 3	F	412	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LBS