Analysis of interatomic Contacts of Structural Units in PDB entry:
6LC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LC1 entry

There are 8 chains in PDB entry 6LC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 A 1 G 26
J
 GLY 265PRO 350
L
 C 1 C 25
A
 ARG 266SER 351
C
 T 1 A 25
D
 GLY 265PRO 350
F
 A 1 G 26
G
 ARG 266SER 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6LC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
J
285 298Right-handed alpha
Helix 2
AA2
J
319 330Right-handed alpha
Helix 3
AA3
A
284 298Right-handed alpha
Helix 4
AA4
A
315 318Right-handed 310
Helix 5
AA5
A
319 330Right-handed alpha
Helix 6
AA6
A
333 337Right-handed 310
Helix 7
AA7
A
339 343Right-handed 310
Helix 8
AA8
D
284 298Right-handed alpha
Helix 9
AA9
D
314 318Right-handed 310
Helix 10
AB1
D
319 331Right-handed alpha
Helix 11
AB2
D
333 337Right-handed 310
Helix 12
AB3
D
339 343Right-handed 310
Helix 13
AB4
G
284 297Right-handed alpha
Helix 14
AB5
G
319 330Right-handed alpha
Helix 15
AB6
G
333 337Right-handed 310
Helix 16
AB7
G
339 343Right-handed 310
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There are 4 sheets in PDB entry 6LC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
276 278first strand
Strand 2
J
281 283anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
281 283anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
276 278first strand
Strand 2
D
281 283anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
276 278first strand
Strand 2
G
281 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il