Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LCD entry

There are 2 chains in PDB entry 6LCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLU 410
B
 LEU 5GLU 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6LCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
16 20Right-handed 310
Helix 3
AA3
A
98 101Right-handed 310
Helix 4
AA4
A
102 116Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
129 138Right-handed alpha
Helix 7
AA7
A
141 146Right-handed 310
Helix 8
AA8
A
147 154Right-handed alpha
Helix 9
AA9
A
158 175Right-handed alpha
Helix 10
AB1
A
185 200Right-handed alpha
Helix 11
AB2
A
210 230Right-handed alpha
Helix 12
AB3
A
232 247Right-handed alpha
Helix 13
AB4
A
256 268Right-handed alpha
Helix 14
AB5
A
269 281Right-handed alpha
Helix 15
AB6
A
292 311Right-handed alpha
Helix 16
AB7
A
311 321Right-handed alpha
Helix 17
AB8
A
329 338Right-handed alpha
Helix 18
AB9
A
342 371Right-handed alpha
Helix 19
AC1
A
375 399Right-handed alpha
Helix 20
AC2
A
399 404Right-handed alpha
Helix 21
AC3
A
405 408Right-handed 310
Helix 22
AC4
B
6 11Right-handed alpha
Helix 23
AC5
B
16 20Right-handed 310
Helix 24
AC6
B
78 82Right-handed 310
Helix 25
AC7
B
98 116Right-handed alpha
Helix 26
AC8
B
117 121Right-handed 310
Helix 27
AC9
B
129 140Right-handed alpha
Helix 28
AD1
B
141 148Right-handed 310
Helix 29
AD2
B
149 154Right-handed alpha
Helix 30
AD3
B
158 175Right-handed alpha
Helix 31
AD4
B
185 198Right-handed alpha
Helix 32
AD5
B
210 230Right-handed alpha
Helix 33
AD6
B
232 247Right-handed alpha
Helix 34
AD7
B
256 268Right-handed alpha
Helix 35
AD8
B
269 281Right-handed alpha
Helix 36
AD9
B
292 321Right-handed alpha
Helix 37
AE1
B
329 339Right-handed alpha
Helix 38
AE2
B
342 371Right-handed alpha
Helix 39
AE3
B
375 399Right-handed alpha
Helix 40
AE4
B
403 408Right-handed 310
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There are 2 sheets in PDB entry 6LCD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
93 96anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
93 96anti-parallel
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