Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LCF entry

There are 2 chains in PDB entry 6LCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 39GLN 441
B
 GLY 39GLN 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6LCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
84 86Right-handed 310
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
111 118Right-handed alpha
Helix 5
AA5
A
124 130Right-handed alpha
Helix 6
AA6
A
133 137Right-handed 310
Helix 7
AA7
A
138 145Right-handed alpha
Helix 8
AA8
A
167 173Right-handed alpha
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
211 226Right-handed alpha
Helix 11
AB2
A
242 257Right-handed alpha
Helix 12
AB3
A
275 280Right-handed alpha
Helix 13
AB4
A
292 302Right-handed alpha
Helix 14
AB5
A
337 350Right-handed alpha
Helix 15
AB6
A
350 358Right-handed alpha
Helix 16
AB7
A
359 362Right-handed 310
Helix 17
AB8
A
367 374Right-handed alpha
Helix 18
AB9
A
379 391Right-handed alpha
Helix 19
AC1
A
401 406Right-handed alpha
Helix 20
AC2
A
411 423Right-handed alpha
Helix 21
AC3
A
426 440Right-handed alpha
Helix 22
AC4
B
59 73Right-handed alpha
Helix 23
AC5
B
84 86Right-handed 310
Helix 24
AC6
B
87 98Right-handed alpha
Helix 25
AC7
B
111 118Right-handed alpha
Helix 26
AC8
B
124 130Right-handed alpha
Helix 27
AC9
B
133 137Right-handed 310
Helix 28
AD1
B
138 145Right-handed alpha
Helix 29
AD2
B
167 174Right-handed alpha
Helix 30
AD3
B
183 196Right-handed alpha
Helix 31
AD4
B
211 226Right-handed alpha
Helix 32
AD5
B
242 257Right-handed alpha
Helix 33
AD6
B
265 269Right-handed 310
Helix 34
AD7
B
275 280Right-handed alpha
Helix 35
AD8
B
292 302Right-handed alpha
Helix 36
AD9
B
337 350Right-handed alpha
Helix 37
AE1
B
350 358Right-handed alpha
Helix 38
AE2
B
359 362Right-handed 310
Helix 39
AE3
B
367 372Right-handed alpha
Helix 40
AE4
B
379 391Right-handed alpha
Helix 41
AE5
B
401 406Right-handed alpha
Helix 42
AE6
B
411 423Right-handed alpha
Helix 43
AE7
B
426 440Right-handed alpha
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There are 8 sheets in PDB entry 6LCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
50 56parallel
Strand 3
A
104 108parallel
Strand 4
A
324 331anti-parallel
Strand 5
A
154 166anti-parallel
Strand 6
A
285 289anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
50 56parallel
Strand 3
A
104 108parallel
Strand 4
A
324 331anti-parallel
Strand 5
A
154 166anti-parallel
Strand 6
A
307 310anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
150 151anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
320 321anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 83first strand
Strand 2
B
50 56parallel
Strand 3
B
104 108parallel
Strand 4
B
324 331anti-parallel
Strand 5
B
154 166anti-parallel
Strand 6
B
285 289anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 83first strand
Strand 2
B
50 56parallel
Strand 3
B
104 108parallel
Strand 4
B
324 331anti-parallel
Strand 5
B
154 166anti-parallel
Strand 6
B
307 310anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
150 151anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 313first strand
Strand 2
B
320 321anti-parallel
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