Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LCJ entry

There are 6 chains in PDB entry 6LCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	LEU 476
B	SER -1	LEU 476
C	GLY -2	LEU 476
D	GLY -2	ARG 457
E	GLY -2	LEU 476
F	GLY -2	VAL 455

There are116 helices in PDB entry 6LCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	74	Right-handed 310
Helix 2	AA2	A	76	82	Right-handed alpha
Helix 3	AA3	A	137	147	Right-handed alpha
Helix 4	AA4	A	162	167	Right-handed alpha
Helix 5	AA5	A	171	183	Right-handed alpha
Helix 6	AA6	A	211	222	Right-handed alpha
Helix 7	AA7	A	240	246	Right-handed alpha
Helix 8	AA8	A	247	250	Right-handed 310
Helix 9	AA9	A	276	293	Right-handed alpha
Helix 10	AB1	A	302	307	Right-handed 310
Helix 11	AB2	A	310	312	Right-handed 310
Helix 12	AB3	A	313	329	Right-handed alpha
Helix 13	AB4	A	339	344	Right-handed alpha
Helix 14	AB5	A	362	367	Right-handed alpha
Helix 15	AB6	A	376	386	Right-handed alpha
Helix 16	AB7	A	387	391	Right-handed 310
Helix 17	AB8	A	411	426	Right-handed alpha
Helix 18	AB9	A	433	437	Right-handed 310
Helix 19	AC1	A	438	451	Right-handed alpha
Helix 20	AC2	B	67	74	Right-handed 310
Helix 21	AC3	B	76	82	Right-handed alpha
Helix 22	AC4	B	137	147	Right-handed alpha
Helix 23	AC5	B	162	167	Right-handed alpha
Helix 24	AC6	B	171	183	Right-handed alpha
Helix 25	AC7	B	212	222	Right-handed alpha
Helix 26	AC8	B	240	246	Right-handed alpha
Helix 27	AC9	B	247	250	Right-handed 310
Helix 28	AD1	B	276	293	Right-handed alpha
Helix 29	AD2	B	302	308	Right-handed 310
Helix 30	AD3	B	310	312	Right-handed 310
Helix 31	AD4	B	313	329	Right-handed alpha
Helix 32	AD5	B	339	344	Right-handed alpha
Helix 33	AD6	B	362	367	Right-handed alpha
Helix 34	AD7	B	376	386	Right-handed alpha
Helix 35	AD8	B	387	391	Right-handed 310
Helix 36	AD9	B	411	426	Right-handed alpha
Helix 37	AE1	B	433	437	Right-handed 310
Helix 38	AE2	B	438	451	Right-handed alpha
Helix 39	AE3	C	67	74	Right-handed 310
Helix 40	AE4	C	76	82	Right-handed alpha
Helix 41	AE5	C	137	146	Right-handed alpha
Helix 42	AE6	C	162	167	Right-handed alpha
Helix 43	AE7	C	171	183	Right-handed alpha
Helix 44	AE8	C	212	222	Right-handed alpha
Helix 45	AE9	C	240	246	Right-handed alpha
Helix 46	AF1	C	247	250	Right-handed 310
Helix 47	AF2	C	276	294	Right-handed alpha
Helix 48	AF3	C	302	308	Right-handed 310
Helix 49	AF4	C	310	312	Right-handed 310
Helix 50	AF5	C	313	329	Right-handed alpha
Helix 51	AF6	C	340	344	Right-handed 310
Helix 52	AF7	C	362	367	Right-handed alpha
Helix 53	AF8	C	376	386	Right-handed alpha
Helix 54	AF9	C	387	393	Right-handed 310
Helix 55	AG1	C	411	426	Right-handed alpha
Helix 56	AG2	C	433	437	Right-handed 310
Helix 57	AG3	C	438	451	Right-handed alpha
Helix 58	AG4	C	473	476	Right-handed 310
Helix 59	AG5	D	67	74	Right-handed 310
Helix 60	AG6	D	76	82	Right-handed alpha
Helix 61	AG7	D	137	146	Right-handed alpha
Helix 62	AG8	D	162	167	Right-handed alpha
Helix 63	AG9	D	171	183	Right-handed alpha
Helix 64	AH1	D	212	222	Right-handed alpha
Helix 65	AH2	D	240	246	Right-handed alpha
Helix 66	AH3	D	247	250	Right-handed 310
Helix 67	AH4	D	276	294	Right-handed alpha
Helix 68	AH5	D	302	308	Right-handed 310
Helix 69	AH6	D	310	312	Right-handed 310
Helix 70	AH7	D	313	328	Right-handed alpha
Helix 71	AH8	D	340	344	Right-handed 310
Helix 72	AH9	D	362	367	Right-handed alpha
Helix 73	AI1	D	376	386	Right-handed alpha
Helix 74	AI2	D	387	393	Right-handed 310
Helix 75	AI3	D	411	426	Right-handed alpha
Helix 76	AI4	D	433	437	Right-handed 310
Helix 77	AI5	D	438	450	Right-handed alpha
Helix 78	AI6	E	67	74	Right-handed 310
Helix 79	AI7	E	76	82	Right-handed alpha
Helix 80	AI8	E	137	147	Right-handed alpha
Helix 81	AI9	E	162	167	Right-handed alpha
Helix 82	AJ1	E	171	183	Right-handed alpha
Helix 83	AJ2	E	212	222	Right-handed alpha
Helix 84	AJ3	E	240	246	Right-handed alpha
Helix 85	AJ4	E	247	250	Right-handed 310
Helix 86	AJ5	E	276	294	Right-handed alpha
Helix 87	AJ6	E	302	308	Right-handed 310
Helix 88	AJ7	E	310	312	Right-handed 310
Helix 89	AJ8	E	313	329	Right-handed alpha
Helix 90	AJ9	E	340	344	Right-handed 310
Helix 91	AK1	E	362	367	Right-handed alpha
Helix 92	AK2	E	376	386	Right-handed alpha
Helix 93	AK3	E	387	393	Right-handed 310
Helix 94	AK4	E	411	426	Right-handed alpha
Helix 95	AK5	E	433	437	Right-handed 310
Helix 96	AK6	E	438	451	Right-handed alpha
Helix 97	AK7	E	473	476	Right-handed 310
Helix 98	AK8	F	67	74	Right-handed 310
Helix 99	AK9	F	76	82	Right-handed alpha
Helix 100	AL1	F	137	146	Right-handed alpha
Helix 101	AL2	F	162	167	Right-handed alpha
Helix 102	AL3	F	171	183	Right-handed alpha
Helix 103	AL4	F	212	222	Right-handed alpha
Helix 104	AL5	F	240	246	Right-handed alpha
Helix 105	AL6	F	247	250	Right-handed 310
Helix 106	AL7	F	276	294	Right-handed alpha
Helix 107	AL8	F	302	308	Right-handed 310
Helix 108	AL9	F	310	312	Right-handed 310
Helix 109	AM1	F	313	329	Right-handed alpha
Helix 110	AM2	F	340	344	Right-handed 310
Helix 111	AM3	F	362	367	Right-handed alpha
Helix 112	AM4	F	376	386	Right-handed alpha
Helix 113	AM5	F	387	393	Right-handed 310
Helix 114	AM6	F	411	426	Right-handed alpha
Helix 115	AM7	F	433	437	Right-handed 310
Helix 116	AM8	F	438	450	Right-handed alpha

There are 30 sheets in PDB entry 6LCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-1	5	first strand
Strand 2	A	8	14	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	A	118	123	anti-parallel
Strand 5	A	110	115	anti-parallel
Strand 6	A	85	88	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	23	27	anti-parallel
Strand 3	A	129	136	anti-parallel
Strand 4	A	99	105	anti-parallel
Strand 5	A	90	94	anti-parallel
Strand 6	A	41	45	anti-parallel
Strand 7	A	53	56	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	349	351	parallel
Strand 3	A	332	335	parallel
Strand 4	A	295	300	parallel
Strand 5	A	226	231	parallel
Strand 6	A	189	192	parallel
Strand 7	A	159	161	parallel
Strand 8	A	429	430	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	202	205	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	260	264	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	462	465	anti-parallel
Strand 3	A	468	471	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	0	5	first strand
Strand 2	B	8	13	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	119	123	anti-parallel
Strand 5	B	110	114	anti-parallel
Strand 6	B	85	88	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	128	136	anti-parallel
Strand 4	B	99	105	anti-parallel
Strand 5	B	90	94	anti-parallel
Strand 6	B	41	45	anti-parallel
Strand 7	B	53	56	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	349	351	parallel
Strand 3	B	332	335	parallel
Strand 4	B	295	300	parallel
Strand 5	B	226	231	parallel
Strand 6	B	189	192	parallel
Strand 7	B	159	161	parallel
Strand 8	B	429	430	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	202	205	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	260	264	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	462	465	anti-parallel
Strand 3	B	468	471	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-1	4	first strand
Strand 2	C	9	14	anti-parallel
Strand 3	C	30	34	anti-parallel
Strand 4	C	118	123	anti-parallel
Strand 5	C	110	115	anti-parallel
Strand 6	C	85	88	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	90	94	anti-parallel
Strand 6	C	41	45	anti-parallel
Strand 7	C	53	56	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	349	351	parallel
Strand 3	C	332	335	parallel
Strand 4	C	295	300	parallel
Strand 5	C	226	231	parallel
Strand 6	C	189	192	parallel
Strand 7	C	158	161	parallel
Strand 8	C	428	430	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	267	271	anti-parallel
Strand 3	C	260	264	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	462	465	anti-parallel
Strand 3	C	468	471	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-1	5	first strand
Strand 2	D	8	14	anti-parallel
Strand 3	D	30	33	anti-parallel
Strand 4	D	118	123	anti-parallel
Strand 5	D	110	115	anti-parallel
Strand 6	D	85	88	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	23	27	anti-parallel
Strand 3	D	129	136	anti-parallel
Strand 4	D	99	105	anti-parallel
Strand 5	D	90	94	anti-parallel
Strand 6	D	41	45	anti-parallel
Strand 7	D	53	56	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	349	351	parallel
Strand 3	D	332	335	parallel
Strand 4	D	295	300	parallel
Strand 5	D	226	231	parallel
Strand 6	D	189	192	parallel
Strand 7	D	159	161	parallel
Strand 8	D	429	430	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	267	271	anti-parallel
Strand 3	D	260	264	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	-1	4	first strand
Strand 2	E	9	14	anti-parallel
Strand 3	E	30	34	anti-parallel
Strand 4	E	119	123	anti-parallel
Strand 5	E	110	114	anti-parallel
Strand 6	E	86	88	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	E	23	27	anti-parallel
Strand 3	E	129	136	anti-parallel
Strand 4	E	99	105	anti-parallel
Strand 5	E	90	94	anti-parallel
Strand 6	E	41	45	anti-parallel
Strand 7	E	53	56	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	349	351	parallel
Strand 3	E	332	335	parallel
Strand 4	E	295	300	parallel
Strand 5	E	226	231	parallel
Strand 6	E	189	192	parallel
Strand 7	E	158	161	parallel
Strand 8	E	428	430	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	267	271	anti-parallel
Strand 3	E	260	264	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	459	first strand
Strand 2	E	462	465	anti-parallel
Strand 3	E	468	471	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-1	5	first strand
Strand 2	F	8	14	anti-parallel
Strand 3	F	30	34	anti-parallel
Strand 4	F	118	123	anti-parallel
Strand 5	F	110	115	anti-parallel
Strand 6	F	85	88	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	23	27	anti-parallel
Strand 3	F	129	136	anti-parallel
Strand 4	F	99	105	anti-parallel
Strand 5	F	90	94	anti-parallel
Strand 6	F	41	45	anti-parallel
Strand 7	F	53	56	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	397	first strand
Strand 2	F	349	351	parallel
Strand 3	F	332	335	parallel
Strand 4	F	295	300	parallel
Strand 5	F	226	231	parallel
Strand 6	F	189	192	parallel
Strand 7	F	159	161	parallel
Strand 8	F	429	430	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	267	271	anti-parallel
Strand 3	F	260	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCJ