Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LCK entry

There are 3 chains in PDB entry 6LCK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	LEU 476
B	GLY -2	LEU 476
C	GLY -2	LEU 476

There are 58 helices in PDB entry 6LCK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	74	Right-handed 310
Helix 2	AA2	A	76	82	Right-handed alpha
Helix 3	AA3	A	137	147	Right-handed alpha
Helix 4	AA4	A	162	167	Right-handed alpha
Helix 5	AA5	A	171	183	Right-handed alpha
Helix 6	AA6	A	212	222	Right-handed alpha
Helix 7	AA7	A	240	246	Right-handed alpha
Helix 8	AA8	A	247	250	Right-handed 310
Helix 9	AA9	A	276	294	Right-handed alpha
Helix 10	AB1	A	302	308	Right-handed 310
Helix 11	AB2	A	310	312	Right-handed 310
Helix 12	AB3	A	313	329	Right-handed alpha
Helix 13	AB4	A	340	344	Right-handed 310
Helix 14	AB5	A	362	367	Right-handed alpha
Helix 15	AB6	A	376	386	Right-handed alpha
Helix 16	AB7	A	387	391	Right-handed 310
Helix 17	AB8	A	411	426	Right-handed alpha
Helix 18	AB9	A	433	437	Right-handed 310
Helix 19	AC1	A	438	451	Right-handed alpha
Helix 20	AC2	B	67	74	Right-handed 310
Helix 21	AC3	B	76	82	Right-handed alpha
Helix 22	AC4	B	137	147	Right-handed alpha
Helix 23	AC5	B	162	167	Right-handed alpha
Helix 24	AC6	B	171	183	Right-handed alpha
Helix 25	AC7	B	211	222	Right-handed alpha
Helix 26	AC8	B	240	246	Right-handed alpha
Helix 27	AC9	B	247	250	Right-handed 310
Helix 28	AD1	B	276	294	Right-handed alpha
Helix 29	AD2	B	302	308	Right-handed 310
Helix 30	AD3	B	310	312	Right-handed 310
Helix 31	AD4	B	313	328	Right-handed alpha
Helix 32	AD5	B	340	344	Right-handed 310
Helix 33	AD6	B	362	367	Right-handed alpha
Helix 34	AD7	B	376	386	Right-handed alpha
Helix 35	AD8	B	387	393	Right-handed 310
Helix 36	AD9	B	411	426	Right-handed alpha
Helix 37	AE1	B	433	437	Right-handed 310
Helix 38	AE2	B	438	451	Right-handed alpha
Helix 39	AE3	B	473	476	Right-handed 310
Helix 40	AE4	C	67	74	Right-handed 310
Helix 41	AE5	C	76	82	Right-handed alpha
Helix 42	AE6	C	137	147	Right-handed alpha
Helix 43	AE7	C	162	167	Right-handed alpha
Helix 44	AE8	C	171	183	Right-handed alpha
Helix 45	AE9	C	211	222	Right-handed alpha
Helix 46	AF1	C	240	246	Right-handed alpha
Helix 47	AF2	C	247	250	Right-handed 310
Helix 48	AF3	C	276	294	Right-handed alpha
Helix 49	AF4	C	302	307	Right-handed 310
Helix 50	AF5	C	310	312	Right-handed 310
Helix 51	AF6	C	313	328	Right-handed alpha
Helix 52	AF7	C	339	344	Right-handed alpha
Helix 53	AF8	C	362	367	Right-handed alpha
Helix 54	AF9	C	376	386	Right-handed alpha
Helix 55	AG1	C	387	391	Right-handed 310
Helix 56	AG2	C	411	426	Right-handed alpha
Helix 57	AG3	C	433	437	Right-handed 310
Helix 58	AG4	C	438	451	Right-handed alpha

There are 17 sheets in PDB entry 6LCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-1	5	first strand
Strand 2	A	8	14	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	A	118	123	anti-parallel
Strand 5	A	110	115	anti-parallel
Strand 6	A	86	88	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	128	136	anti-parallel
Strand 4	A	99	105	anti-parallel
Strand 5	A	90	94	anti-parallel
Strand 6	A	41	45	anti-parallel
Strand 7	A	53	56	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	349	351	parallel
Strand 3	A	332	335	parallel
Strand 4	A	295	300	parallel
Strand 5	A	226	231	parallel
Strand 6	A	189	192	parallel
Strand 7	A	158	161	parallel
Strand 8	A	428	430	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	260	264	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	462	465	anti-parallel
Strand 3	A	468	471	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-1	5	first strand
Strand 2	B	8	14	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	118	123	anti-parallel
Strand 5	B	110	115	anti-parallel
Strand 6	B	86	88	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	129	136	anti-parallel
Strand 4	B	99	105	anti-parallel
Strand 5	B	90	94	anti-parallel
Strand 6	B	41	45	anti-parallel
Strand 7	B	53	56	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	349	351	parallel
Strand 3	B	332	335	parallel
Strand 4	B	295	300	parallel
Strand 5	B	226	231	parallel
Strand 6	B	189	192	parallel
Strand 7	B	158	161	parallel
Strand 8	B	428	430	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	202	205	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	260	264	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	462	465	anti-parallel
Strand 3	B	468	471	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-1	5	first strand
Strand 2	C	8	14	anti-parallel
Strand 3	C	30	34	anti-parallel
Strand 4	C	118	123	anti-parallel
Strand 5	C	110	115	anti-parallel
Strand 6	C	85	88	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	90	94	anti-parallel
Strand 6	C	41	45	anti-parallel
Strand 7	C	53	56	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	349	351	parallel
Strand 3	C	332	335	parallel
Strand 4	C	295	300	parallel
Strand 5	C	226	231	parallel
Strand 6	C	189	192	parallel
Strand 7	C	159	161	parallel
Strand 8	C	429	430	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	202	205	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	267	271	anti-parallel
Strand 3	C	260	264	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	462	465	anti-parallel
Strand 3	C	468	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LCK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCK