Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LCN entry

There are 6 chains in PDB entry 6LCN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	ALA 310
B	GLY -7	SER 311
C	LYS 8	SER 311
D	ASP 4	SER 311
E	LEU 7	SER 311
F	HIS -10	SER 311

There are 59 helices in PDB entry 6LCN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	9	Right-handed 310
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	26	29	Right-handed 310
Helix 4	AA4	A	38	54	Right-handed alpha
Helix 5	AA5	A	67	100	Right-handed alpha
Helix 6	AA6	A	111	125	Right-handed alpha
Helix 7	AA7	A	125	144	Right-handed alpha
Helix 8	AA8	A	149	157	Right-handed alpha
Helix 9	AA9	A	157	175	Right-handed alpha
Helix 10	AB1	A	179	193	Right-handed alpha
Helix 11	AB2	B	4	9	Right-handed 310
Helix 12	AB3	B	10	25	Right-handed alpha
Helix 13	AB4	B	26	29	Right-handed 310
Helix 14	AB5	B	38	54	Right-handed alpha
Helix 15	AB6	B	67	99	Right-handed alpha
Helix 16	AB7	B	110	125	Right-handed alpha
Helix 17	AB8	B	125	144	Right-handed alpha
Helix 18	AB9	B	149	157	Right-handed alpha
Helix 19	AC1	B	157	175	Right-handed alpha
Helix 20	AC2	B	179	193	Right-handed alpha
Helix 21	AC3	C	10	25	Right-handed alpha
Helix 22	AC4	C	26	29	Right-handed 310
Helix 23	AC5	C	38	54	Right-handed alpha
Helix 24	AC6	C	67	99	Right-handed alpha
Helix 25	AC7	C	111	125	Right-handed alpha
Helix 26	AC8	C	125	144	Right-handed alpha
Helix 27	AC9	C	149	157	Right-handed alpha
Helix 28	AD1	C	157	175	Right-handed alpha
Helix 29	AD2	C	179	193	Right-handed alpha
Helix 30	AD3	D	5	9	Right-handed 310
Helix 31	AD4	D	10	25	Right-handed alpha
Helix 32	AD5	D	26	29	Right-handed 310
Helix 33	AD6	D	38	54	Right-handed alpha
Helix 34	AD7	D	67	100	Right-handed alpha
Helix 35	AD8	D	110	125	Right-handed alpha
Helix 36	AD9	D	125	144	Right-handed alpha
Helix 37	AE1	D	149	157	Right-handed alpha
Helix 38	AE2	D	157	175	Right-handed alpha
Helix 39	AE3	D	179	193	Right-handed alpha
Helix 40	AE4	E	7	9	Right-handed 310
Helix 41	AE5	E	10	25	Right-handed alpha
Helix 42	AE6	E	26	29	Right-handed 310
Helix 43	AE7	E	38	54	Right-handed alpha
Helix 44	AE8	E	67	100	Right-handed alpha
Helix 45	AE9	E	110	125	Right-handed alpha
Helix 46	AF1	E	125	144	Right-handed alpha
Helix 47	AF2	E	149	157	Right-handed alpha
Helix 48	AF3	E	157	175	Right-handed alpha
Helix 49	AF4	E	179	193	Right-handed alpha
Helix 50	AF5	F	4	9	Right-handed 310
Helix 51	AF6	F	10	25	Right-handed alpha
Helix 52	AF7	F	26	29	Right-handed 310
Helix 53	AF8	F	38	54	Right-handed alpha
Helix 54	AF9	F	67	99	Right-handed alpha
Helix 55	AG1	F	110	125	Right-handed alpha
Helix 56	AG2	F	125	144	Right-handed alpha
Helix 57	AG3	F	149	157	Right-handed alpha
Helix 58	AG4	F	157	175	Right-handed alpha
Helix 59	AG5	F	179	193	Right-handed alpha

There are 18 sheets in PDB entry 6LCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	215	216	parallel
Strand 3	A	233	235	parallel
Strand 4	A	268	270	parallel
Strand 5	A	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	221	222	parallel
Strand 3	A	256	257	parallel
Strand 4	A	275	276	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	227	228	parallel
Strand 3	A	262	263	parallel
Strand 4	A	281	282	parallel
Strand 5	A	296	300	parallel
Strand 6	E	305	309	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	F	296	300	anti-parallel
Strand 3	F	281	282	parallel
Strand 4	F	262	263	parallel
Strand 5	F	227	228	parallel
Strand 6	F	207	208	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	215	216	parallel
Strand 3	B	233	235	parallel
Strand 4	B	268	270	parallel
Strand 5	B	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	221	222	parallel
Strand 3	B	256	257	parallel
Strand 4	B	275	276	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	227	228	parallel
Strand 3	B	262	263	parallel
Strand 4	B	281	282	parallel
Strand 5	B	296	300	parallel
Strand 6	C	305	309	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	309	first strand
Strand 2	D	296	300	anti-parallel
Strand 3	D	281	282	parallel
Strand 4	D	262	263	parallel
Strand 5	D	227	228	parallel
Strand 6	D	207	208	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	215	216	parallel
Strand 3	C	233	235	parallel
Strand 4	C	268	270	parallel
Strand 5	C	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	221	222	parallel
Strand 3	C	256	257	parallel
Strand 4	C	275	276	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	227	228	parallel
Strand 3	C	262	263	parallel
Strand 4	C	281	282	parallel
Strand 5	C	296	300	parallel
Strand 6	D	305	309	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	215	216	parallel
Strand 3	D	233	235	parallel
Strand 4	D	268	270	parallel
Strand 5	D	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	221	222	parallel
Strand 3	D	256	257	parallel
Strand 4	D	275	276	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	196	first strand
Strand 2	E	215	216	parallel
Strand 3	E	233	235	parallel
Strand 4	E	268	270	parallel
Strand 5	E	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	202	first strand
Strand 2	E	221	222	parallel
Strand 3	E	256	257	parallel
Strand 4	E	275	276	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	227	228	parallel
Strand 3	E	262	263	parallel
Strand 4	E	281	282	parallel
Strand 5	E	296	300	parallel
Strand 6	F	305	309	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	215	216	parallel
Strand 3	F	233	235	parallel
Strand 4	F	268	270	parallel
Strand 5	F	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	202	first strand
Strand 2	F	221	222	parallel
Strand 3	F	256	257	parallel
Strand 4	F	275	276	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LCN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCN