Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LCP entry

There are 2 chains in PDB entry 6LCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 83ALA 1356
B
 ALA 23GLN 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6LCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 132Right-handed alpha
Helix 2
AA2
A
135 147Right-handed alpha
Helix 3
AA3
A
161 191Right-handed alpha
Helix 4
AA4
A
332 334Right-handed 310
Helix 5
AA5
A
359 363Right-handed 310
Helix 6
AA6
A
440 442Right-handed 310
Helix 7
AA7
A
484 515Right-handed alpha
Helix 8
AA8
A
519 525Right-handed alpha
Helix 9
AA9
A
532 548Right-handed alpha
Helix 10
AB1
A
549 553Right-handed 310
Helix 11
AB2
A
554 573Right-handed alpha
Helix 12
AB3
A
574 578Right-handed 310
Helix 13
AB4
A
595 599Right-handed 310
Helix 14
AB5
A
633 643Right-handed alpha
Helix 15
AB6
A
648 672Right-handed alpha
Helix 16
AB7
A
687 696Right-handed alpha
Helix 17
AB8
A
699 713Right-handed alpha
Helix 18
AB9
A
737 748Right-handed alpha
Helix 19
AC1
A
806 811Right-handed alpha
Helix 20
AC2
A
819 836Right-handed alpha
Helix 21
AC3
A
849 866Right-handed alpha
Helix 22
AC4
A
869 878Right-handed alpha
Helix 23
AC5
A
900 912Right-handed alpha
Helix 24
AC6
A
922 933Right-handed alpha
Helix 25
AC7
A
954 973Right-handed alpha
Helix 26
AC8
A
979 984Right-handed alpha
Helix 27
AC9
A
1002 1009Right-handed alpha
Helix 28
AD1
A
1012 1024Right-handed alpha
Helix 29
AD2
A
1033 1048Right-handed alpha
Helix 30
AD3
A
1058 1068Right-handed alpha
Helix 31
AD4
A
1094 1103Right-handed alpha
Helix 32
AD5
A
1104 1135Right-handed alpha
Helix 33
AD6
A
1147 1152Right-handed alpha
Helix 34
AD7
A
1157 1167Right-handed alpha
Helix 35
AD8
A
1174 1179Right-handed alpha
Helix 36
AD9
A
1180 1182Right-handed 310
Helix 37
AE1
A
1183 1188Right-handed alpha
Helix 38
AE2
A
1195 1221Right-handed alpha
Helix 39
AE3
A
1236 1257Right-handed alpha
Helix 40
AE4
A
1263 1284Right-handed alpha
Helix 41
AE5
A
1295 1300Right-handed alpha
Helix 42
AE6
A
1302 1330Right-handed alpha
Helix 43
AE7
A
1333 1345Right-handed alpha
Helix 44
AE8
A
1347 1356Right-handed alpha
Helix 45
AE9
B
49 75Right-handed alpha
Helix 46
AF1
B
82 89Right-handed alpha
Helix 47
AF2
B
174 181Right-handed alpha
Helix 48
AF3
B
211 216Right-handed alpha
Helix 49
AF4
B
249 256Right-handed alpha
Helix 50
AF5
B
292 299Right-handed alpha
Helix 51
AF6
B
334 338Right-handed 310
Helix 52
AF7
B
356 382Right-handed alpha
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There are 10 sheets in PDB entry 6LCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
400 403anti-parallel
Strand 3
A
417 419anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
193 196anti-parallel
Strand 3
A
339 341anti-parallel
Strand 4
A
459 461anti-parallel
Strand 5
A
352 353anti-parallel
Strand 6
A
444 445anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
450 452anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
1088 1090anti-parallel
Strand 3
A
1070 1074parallel
Strand 4
A
1053 1056parallel
Strand 5
A
603 605parallel
Strand 6
A
915 918parallel
Strand 7
A
1026 1030parallel
Strand 8
A
996 1001parallel
Strand 9
A
941 945parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 627first strand
Strand 2
A
612 623anti-parallel
Strand 3
A
886 897anti-parallel
Strand 4
A
839 846anti-parallel
Strand 5
A
799 805anti-parallel
Strand 6
A
787 793anti-parallel
Strand 7
A
775 779anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 723first strand
Strand 2
A
731 734anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 755first strand
Strand 2
A
763 766anti-parallel
Strand 3
A
769 772anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1262first strand
Strand 2
B
40 42anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
340 344anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
307 314anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
119 126anti-parallel
Strand 3
B
135 145anti-parallel
Strand 4
B
322 329anti-parallel
Strand 5
B
221 223anti-parallel
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