Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LCR entry

There are 2 chains in PDB entry 6LCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 158ALA 1356
B
 ALA 23GLN 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6LCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
162 184Right-handed alpha
Helix 2
AA2
A
332 334Right-handed 310
Helix 3
AA3
A
359 361Right-handed 310
Helix 4
AA4
A
468 473Right-handed alpha
Helix 5
AA5
A
483 488Right-handed alpha
Helix 6
AA6
A
488 514Right-handed alpha
Helix 7
AA7
A
519 525Right-handed alpha
Helix 8
AA8
A
532 548Right-handed alpha
Helix 9
AA9
A
549 552Right-handed 310
Helix 10
AB1
A
553 573Right-handed alpha
Helix 11
AB2
A
590 594Right-handed 310
Helix 12
AB3
A
595 600Right-handed 310
Helix 13
AB4
A
633 642Right-handed alpha
Helix 14
AB5
A
648 671Right-handed alpha
Helix 15
AB6
A
687 696Right-handed alpha
Helix 16
AB7
A
700 713Right-handed alpha
Helix 17
AB8
A
739 748Right-handed alpha
Helix 18
AB9
A
749 751Right-handed 310
Helix 19
AC1
A
806 811Right-handed alpha
Helix 20
AC2
A
819 837Right-handed alpha
Helix 21
AC3
A
849 865Right-handed alpha
Helix 22
AC4
A
869 878Right-handed alpha
Helix 23
AC5
A
878 883Right-handed alpha
Helix 24
AC6
A
900 911Right-handed alpha
Helix 25
AC7
A
922 933Right-handed alpha
Helix 26
AC8
A
954 972Right-handed alpha
Helix 27
AC9
A
978 986Right-handed alpha
Helix 28
AD1
A
1003 1009Right-handed alpha
Helix 29
AD2
A
1013 1024Right-handed alpha
Helix 30
AD3
A
1033 1047Right-handed alpha
Helix 31
AD4
A
1058 1060Right-handed 310
Helix 32
AD5
A
1061 1067Right-handed alpha
Helix 33
AD6
A
1092 1094Right-handed 310
Helix 34
AD7
A
1095 1100Right-handed alpha
Helix 35
AD8
A
1102 1134Right-handed alpha
Helix 36
AD9
A
1146 1152Right-handed alpha
Helix 37
AE1
A
1158 1167Right-handed alpha
Helix 38
AE2
A
1174 1179Right-handed alpha
Helix 39
AE3
A
1180 1182Right-handed 310
Helix 40
AE4
A
1183 1188Right-handed alpha
Helix 41
AE5
A
1193 1220Right-handed alpha
Helix 42
AE6
A
1236 1257Right-handed alpha
Helix 43
AE7
A
1263 1285Right-handed alpha
Helix 44
AE8
A
1294 1301Right-handed alpha
Helix 45
AE9
A
1303 1331Right-handed alpha
Helix 46
AF1
A
1333 1345Right-handed alpha
Helix 47
AF2
A
1347 1356Right-handed alpha
Helix 48
AF3
B
50 55Right-handed alpha
Helix 49
AF4
B
56 75Right-handed alpha
Helix 50
AF5
B
84 89Right-handed alpha
Helix 51
AF6
B
166 171Right-handed alpha
Helix 52
AF7
B
174 179Right-handed alpha
Helix 53
AF8
B
185 190Right-handed alpha
Helix 54
AF9
B
251 255Right-handed 310
Helix 55
AG1
B
269 273Right-handed 310
Helix 56
AG2
B
334 338Right-handed 310
Helix 57
AG3
B
356 383Right-handed alpha
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There are 10 sheets in PDB entry 6LCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
339 341anti-parallel
Strand 4
A
457 460anti-parallel
Strand 5
A
354 357anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
450 452anti-parallel
Strand 3
A
363 367anti-parallel
Strand 4
A
378 381anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 945first strand
Strand 2
A
998 1001parallel
Strand 3
A
1026 1030parallel
Strand 4
A
914 917parallel
Strand 5
A
602 605parallel
Strand 6
A
1052 1056parallel
Strand 7
A
1070 1074parallel
Strand 8
A
1088 1090parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
612 623anti-parallel
Strand 3
A
886 897anti-parallel
Strand 4
A
842 847anti-parallel
Strand 5
A
799 805anti-parallel
Strand 6
A
787 793anti-parallel
Strand 7
A
775 779anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 723first strand
Strand 2
A
731 734anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 766first strand
Strand 2
A
769 772anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1262first strand
Strand 2
B
40 42anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
340 347anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
307 314anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
119 126anti-parallel
Strand 3
B
135 145anti-parallel
Strand 4
B
322 329anti-parallel
Strand 5
B
221 222anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
119 126anti-parallel
Strand 3
B
135 145anti-parallel
Strand 4
B
322 329anti-parallel
Strand 5
B
226 227anti-parallel
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