Analysis of interatomic Contacts of Structural Units in PDB entry:
6LCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LCV entry

There is 1 chain in PDB entry 6LCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2THR 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6LCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 22Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
60 62Right-handed 310
Helix 4
AA4
A
63 77Right-handed alpha
Helix 5
AA5
A
95 98Right-handed 310
Helix 6
AA6
A
99 109Right-handed alpha
Helix 7
AA7
A
110 112Right-handed 310
Helix 8
AA8
A
114 118Right-handed 310
Helix 9
AA9
A
139 142Right-handed 310
Helix 10
AB1
A
168 174Right-handed alpha
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
208 216Right-handed alpha
Helix 13
AB4
A
216 225Right-handed alpha
Helix 14
AB5
A
235 239Right-handed 310
Helix 15
AB6
A
241 253Right-handed alpha
Helix 16
AB7
A
281 291Right-handed alpha
Helix 17
AB8
A
292 293Right-handed 310
Helix 18
AB9
A
294 296Right-handed 310
Helix 19
AC1
A
297 310Right-handed alpha
Helix 20
AC2
A
314 329Right-handed alpha
Helix 21
AC3
A
331 343Right-handed alpha
Helix 22
AC4
A
348 360Right-handed alpha
Helix 23
AC5
A
370 385Right-handed alpha
Helix 24
AC6
A
388 400Right-handed alpha
Helix 25
AC7
A
404 422Right-handed alpha
Helix 26
AC8
A
425 434Right-handed 310
Helix 27
AC9
A
449 464Right-handed alpha
Helix 28
AD1
A
479 487Right-handed alpha
Helix 29
AD2
A
488 491Right-handed 310
Helix 30
AD3
A
492 505Right-handed alpha
Helix 31
AD4
A
511 526Right-handed alpha
Helix 32
AD5
A
529 545Right-handed alpha
Helix 33
AD6
A
554 571Right-handed alpha
Helix 34
AD7
A
571 603Right-handed alpha
Helix 35
AD8
A
623 627Right-handed 310
Helix 36
AD9
A
630 643Right-handed alpha
Helix 37
AE1
A
653 670Right-handed alpha
Helix 38
AE2
A
686 688Right-handed 310
Helix 39
AE3
A
705 712Right-handed alpha
Helix 40
AE4
A
742 746Right-handed alpha
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There are 7 sheets in PDB entry 6LCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
258 260parallel
Strand 3
A
230 233parallel
Strand 4
A
81 86parallel
Strand 5
A
33 36parallel
Strand 6
A
5 8parallel
Strand 7
A
606 610parallel
Strand 8
A
468 469parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
52 58anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
194 195anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
178 182parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
150 153anti-parallel
Strand 3
A
156 159anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 679first strand
Strand 2
A
690 696anti-parallel
Strand 3
A
698 703anti-parallel
Strand 4
A
752 756anti-parallel
Strand 5
A
719 729anti-parallel
Strand 6
A
682 683anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 679first strand
Strand 2
A
690 696anti-parallel
Strand 3
A
698 703anti-parallel
Strand 4
A
752 756anti-parallel
Strand 5
A
719 729anti-parallel
Strand 6
A
735 741anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il