Analysis of interatomic Contacts of Structural Units in PDB entry:
6LD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LD3 entry

There is 1 chain in PDB entry 6LD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 273SER 887
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6LD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
274 289Right-handed alpha
Helix 2
AA2
A
323 329Right-handed alpha
Helix 3
AA3
A
330 334Right-handed 310
Helix 4
AA4
A
336 341Right-handed alpha
Helix 5
AA5
A
350 360Right-handed alpha
Helix 6
AA6
A
368 387Right-handed alpha
Helix 7
AA7
A
396 407Right-handed alpha
Helix 8
AA8
A
423 429Right-handed alpha
Helix 9
AA9
A
429 446Right-handed alpha
Helix 10
AB1
A
479 491Right-handed alpha
Helix 11
AB2
A
491 496Right-handed alpha
Helix 12
AB3
A
500 505Right-handed alpha
Helix 13
AB4
A
512 525Right-handed alpha
Helix 14
AB5
A
539 543Right-handed 310
Helix 15
AB6
A
544 552Right-handed alpha
Helix 16
AB7
A
553 558Right-handed 310
Helix 17
AB8
A
559 573Right-handed alpha
Helix 18
AB9
A
586 588Right-handed 310
Helix 19
AC1
A
607 628Right-handed alpha
Helix 20
AC2
A
633 638Right-handed alpha
Helix 21
AC3
A
642 659Right-handed alpha
Helix 22
AC4
A
673 679Right-handed 310
Helix 23
AC5
A
680 686Right-handed alpha
Helix 24
AC6
A
704 708Right-handed 310
Helix 25
AC7
A
732 741Right-handed alpha
Helix 26
AC8
A
749 768Right-handed alpha
Helix 27
AC9
A
771 785Right-handed alpha
Helix 28
AD1
A
810 820Right-handed alpha
Helix 29
AD2
A
834 838Right-handed 310
Helix 30
AD3
A
842 849Right-handed alpha
Helix 31
AD4
A
855 864Right-handed alpha
Helix 32
AD5
A
864 877Right-handed alpha
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There are 4 sheets in PDB entry 6LD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 311first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
577 584anti-parallel
Strand 4
A
453 458parallel
Strand 5
A
473 477anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
742 743anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
666 669anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 719first strand
Strand 2
A
725 730anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il