Analysis of interatomic Contacts of Structural Units in PDB entry:
6LD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LD7 entry

There are 7 chains in PDB entry 6LD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	THR 205
A	TYR 207	LEU 395
B	PRO 10	THR 205
B	TYR 207	LEU 395
C	THR 9	THR 205
C	TYR 207	THR 396
D	PRO 10	GLN 190

There are 59 helices in PDB entry 6LD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	59	74	Right-handed alpha
Helix 3	AA3	A	83	96	Right-handed alpha
Helix 4	AA4	A	109	122	Right-handed alpha
Helix 5	AA5	A	134	144	Right-handed alpha
Helix 6	AA6	A	163	174	Right-handed alpha
Helix 7	AA7	A	191	196	Right-handed 310
Helix 8	AA8	A	223	237	Right-handed alpha
Helix 9	AA9	A	242	254	Right-handed alpha
Helix 10	AB1	A	255	275	Right-handed alpha
Helix 11	AB2	A	293	301	Right-handed alpha
Helix 12	AB3	A	314	325	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	376	394	Right-handed alpha
Helix 15	AB6	B	12	19	Right-handed alpha
Helix 16	AB7	B	59	74	Right-handed alpha
Helix 17	AB8	B	83	96	Right-handed alpha
Helix 18	AB9	B	109	122	Right-handed alpha
Helix 19	AC1	B	134	143	Right-handed alpha
Helix 20	AC2	B	163	174	Right-handed alpha
Helix 21	AC3	B	185	190	Right-handed alpha
Helix 22	AC4	B	191	196	Right-handed 310
Helix 23	AC5	B	223	238	Right-handed alpha
Helix 24	AC6	B	242	254	Right-handed alpha
Helix 25	AC7	B	255	277	Right-handed alpha
Helix 26	AC8	B	293	301	Right-handed alpha
Helix 27	AC9	B	314	325	Right-handed alpha
Helix 28	AD1	B	344	348	Right-handed 310
Helix 29	AD2	B	354	362	Right-handed alpha
Helix 30	AD3	B	376	394	Right-handed alpha
Helix 31	AD4	C	12	19	Right-handed alpha
Helix 32	AD5	C	59	74	Right-handed alpha
Helix 33	AD6	C	83	96	Right-handed alpha
Helix 34	AD7	C	109	122	Right-handed alpha
Helix 35	AD8	C	134	143	Right-handed alpha
Helix 36	AD9	C	163	174	Right-handed alpha
Helix 37	AE1	C	191	196	Right-handed 310
Helix 38	AE2	C	223	238	Right-handed alpha
Helix 39	AE3	C	242	254	Right-handed alpha
Helix 40	AE4	C	255	275	Right-handed alpha
Helix 41	AE5	C	293	301	Right-handed alpha
Helix 42	AE6	C	315	325	Right-handed alpha
Helix 43	AE7	C	344	348	Right-handed 310
Helix 44	AE8	C	354	361	Right-handed alpha
Helix 45	AE9	C	376	394	Right-handed alpha
Helix 46	AF1	D	12	20	Right-handed alpha
Helix 47	AF2	D	59	74	Right-handed alpha
Helix 48	AF3	D	83	96	Right-handed alpha
Helix 49	AF4	D	109	122	Right-handed alpha
Helix 50	AF5	D	134	143	Right-handed alpha
Helix 51	AF6	D	163	174	Right-handed alpha
Helix 52	AF7	D	191	196	Right-handed 310
Helix 53	AF8	D	223	237	Right-handed alpha
Helix 54	AF9	D	242	254	Right-handed alpha
Helix 55	AG1	D	255	275	Right-handed alpha
Helix 56	AG2	D	293	301	Right-handed alpha
Helix 57	AG3	D	315	324	Right-handed alpha
Helix 58	AG4	D	354	361	Right-handed alpha
Helix 59	AG5	D	376	392	Right-handed alpha

There are 8 sheets in PDB entry 6LD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	177	181	parallel
Strand 5	A	148	151	parallel
Strand 6	A	102	105	parallel
Strand 7	A	128	130	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	307	312	anti-parallel
Strand 3	A	367	371	anti-parallel
Strand 4	A	341	343	anti-parallel
Strand 5	A	330	331	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	177	181	parallel
Strand 5	B	148	152	parallel
Strand 6	B	101	105	parallel
Strand 7	B	126	130	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	307	312	anti-parallel
Strand 3	B	367	371	anti-parallel
Strand 4	B	341	343	anti-parallel
Strand 5	B	330	331	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	199	203	anti-parallel
Strand 4	C	177	181	parallel
Strand 5	C	148	152	parallel
Strand 6	C	101	105	parallel
Strand 7	C	126	130	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	284	first strand
Strand 2	C	307	312	anti-parallel
Strand 3	C	367	371	anti-parallel
Strand 4	C	341	343	anti-parallel
Strand 5	C	330	331	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	217	221	anti-parallel
Strand 3	D	199	203	anti-parallel
Strand 4	D	177	181	parallel
Strand 5	D	148	152	parallel
Strand 6	D	101	105	parallel
Strand 7	D	126	130	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	307	312	anti-parallel
Strand 3	D	367	371	anti-parallel
Strand 4	D	341	343	anti-parallel
Strand 5	D	330	331	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LD7