Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LDK entry

There is 1 chain in PDB entry 6LDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 15GLU 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6LDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
32 41Right-handed alpha
Helix 3
AA3
A
61 81Right-handed alpha
Helix 4
AA4
A
95 105Right-handed alpha
Helix 5
AA5
A
112 118Right-handed alpha
Helix 6
AA6
A
118 145Right-handed alpha
Helix 7
AA7
A
158 175Right-handed alpha
Helix 8
AA8
A
196 201Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
265 272Right-handed 310
Helix 11
AB2
A
289 293Right-handed alpha
Helix 12
AB3
A
304 310Right-handed alpha
Helix 13
AB4
A
337 346Right-handed alpha
Helix 14
AB5
A
377 392Right-handed alpha
Helix 15
AB6
A
427 429Right-handed 310
Helix 16
AB7
A
430 440Right-handed alpha
Helix 17
AB8
A
446 452Right-handed alpha
Helix 18
AB9
A
453 458Right-handed alpha
Helix 19
AC1
A
491 500Right-handed alpha
Helix 20
AC2
A
508 513Right-handed alpha
Helix 21
AC3
A
534 546Right-handed alpha
Helix 22
AC4
A
553 560Right-handed alpha
Helix 23
AC5
A
571 574Right-handed 310
Helix 24
AC6
A
575 589Right-handed alpha
Helix 25
AC7
A
619 628Right-handed alpha
Helix 26
AC8
A
628 638Right-handed alpha
Helix 27
AC9
A
639 644Right-handed 310
Helix 28
AD1
A
650 661Right-handed alpha
Helix 29
AD2
A
661 684Right-handed alpha
Helix 30
AD3
A
697 720Right-handed alpha
Helix 31
AD4
A
725 740Right-handed alpha
Helix 32
AD5
A
745 750Right-handed alpha
Helix 33
AD6
A
756 779Right-handed alpha
Helix 34
AD7
A
782 794Right-handed alpha
Helix 35
AD8
A
795 797Right-handed 310
Helix 36
AD9
A
798 804Right-handed alpha
Helix 37
AE1
A
808 812Right-handed 310
Helix 38
AE2
A
816 820Right-handed 310
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There are 9 sheets in PDB entry 6LDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
149 155parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
178 188anti-parallel
Strand 3
A
416 425anti-parallel
Strand 4
A
463 464anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
204 214anti-parallel
Strand 3
A
395 406anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
261 264parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
281 288anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
241 244parallel
Strand 3
A
330 332anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
593 599parallel
Strand 3
A
563 569parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
532 533anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
477 479anti-parallel
Strand 3
A
525 528anti-parallel
Strand 4
A
516 518anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 603first strand
Strand 2
A
647 648parallel
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