Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LDL entry

There is 1 chain in PDB entry 6LDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28PRO 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6LDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 35Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
50 57Right-handed alpha
Helix 5
AA5
A
72 81Right-handed alpha
Helix 6
AA6
A
99 109Right-handed alpha
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
134 136Right-handed 310
Helix 9
AA9
A
137 142Right-handed alpha
Helix 10
AB1
A
144 158Right-handed alpha
Helix 11
AB2
A
167 171Right-handed alpha
Helix 12
AB3
A
173 185Right-handed alpha
Helix 13
AB4
A
187 194Right-handed alpha
Helix 14
AB5
A
195 198Right-handed 310
Helix 15
AB6
A
201 207Right-handed alpha
Helix 16
AB7
A
210 238Right-handed alpha
Helix 17
AB8
A
243 255Right-handed alpha
Helix 18
AB9
A
260 276Right-handed alpha
Helix 19
AC1
A
276 293Right-handed alpha
Helix 20
AC2
A
293 303Right-handed alpha
Helix 21
AC3
A
306 319Right-handed alpha
Helix 22
AC4
A
348 354Right-handed alpha
Helix 23
AC5
A
371 375Right-handed 310
Helix 24
AC6
A
387 406Right-handed alpha
Helix 25
AC7
A
435 439Right-handed 310
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There are 3 sheets in PDB entry 6LDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
344 347parallel
Strand 4
A
324 328anti-parallel
Strand 5
A
86 87anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
431 433anti-parallel
Strand 3
A
410 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il